Variant report

Variant	rs10005883
Chromosome Location	chr4:30728221-30728222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10003328	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10939311	0.84[ASN][1000 genomes]
rs13105058	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13143986	0.83[EUR][1000 genomes]
rs1486767	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16884042	0.81[YRI][hapmap]
rs6448718	0.84[ASN][1000 genomes]
rs7668393	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9918044	0.89[CEU][hapmap];0.90[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30717800-30728400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:30719000-30729600	Active TSS	Fetal Heart	heart
3	chr4:30723200-30729800	Flanking Active TSS	HUVEC	blood vessel
4	chr4:30724600-30729400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr4:30724800-30729200	Active TSS	Right Ventricle	heart
6	chr4:30725200-30729400	Active TSS	Stomach Smooth Muscle	stomach
7	chr4:30725400-30728400	Active TSS	Rectal Smooth Muscle	rectum
8	chr4:30725600-30728400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr4:30725600-30729400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:30726200-30728400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:30726200-30728400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:30726200-30728400	Active TSS	Fetal Muscle Leg	muscle
13	chr4:30726200-30728400	Active TSS	HMEC	breast
14	chr4:30726200-30729000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr4:30726200-30729000	Active TSS	Aorta	Aorta
16	chr4:30726200-30729200	Active TSS	Fetal Stomach	stomach
17	chr4:30726200-30729200	Active TSS	NHEK	skin
18	chr4:30726200-30729400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:30726200-30729400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:30726200-30730000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:30726200-30732400	Weak transcription	Left Ventricle	heart
22	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:30726400-30728600	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr4:30726400-30729000	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:30727400-30729000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:30727800-30728400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:30727800-30728400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:30727800-30728400	Flanking Active TSS	Fetal Lung	lung
32	chr4:30728000-30728400	Active TSS	Brain Germinal Matrix	brain
33	chr4:30728000-30728600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:30728200-30728400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr4:30728200-30728400	Enhancers	Brain Hippocampus Middle	brain
36	chr4:30728200-30728400	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr4:30728200-30728400	Active TSS	NH-A	brain
38	chr4:30728200-30728800	Weak transcription	Brain Anterior Caudate	brain
39	chr4:30728200-30729000	Weak transcription	Brain Angular Gyrus	brain
40	chr4:30728200-30729000	Weak transcription	Hela-S3	cervix
41	chr4:30728200-30730400	Weak transcription	Fetal Brain Female	brain
42	chr4:30728200-30730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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