Variant report

Variant	rs10939311
Chromosome Location	chr4:30666591-30666592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10003328	0.97[ASN][1000 genomes]
rs10005883	0.84[ASN][1000 genomes]
rs12505073	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12646339	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13105058	0.85[ASN][1000 genomes]
rs1486767	0.90[ASN][1000 genomes]
rs4692477	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6448718	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668393	0.90[ASN][1000 genomes]
rs9918044	0.84[ASN][1000 genomes]
rs9991348	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878809	chr4:30652196-30676425	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30665200-30667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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