Variant report

Variant	rs1486767
Chromosome Location	chr4:30716465-30716466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10003328	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10005883	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939311	0.90[ASN][1000 genomes]
rs13105058	0.87[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[ASN][1000 genomes]
rs16884042	0.83[YRI][hapmap]
rs6448718	0.90[ASN][1000 genomes]
rs7668393	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918044	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1486767	ZFP1	trans	parietal	SCAN
rs1486767	TBC1D19	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30713000-30718400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30713200-30717800	Weak transcription	Aorta	Aorta
3	chr4:30714800-30717600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:30714800-30717800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:30715800-30716800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:30716200-30717400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30716200-30717600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:30716200-30717800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:30716400-30716600	Enhancers	Hela-S3	cervix
10	chr4:30716400-30717800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:30716400-30718200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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