Variant report

Variant	rs11941127
Chromosome Location	chr4:30741492-30741493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10517216	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11721555	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11723028	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11946238	0.81[ASN][1000 genomes]
rs13135261	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13143986	0.83[EUR][1000 genomes]
rs1374650	0.81[ASN][1000 genomes]
rs1374651	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374652	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374654	0.86[ASN][1000 genomes]
rs16884042	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16884047	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029202	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121656	0.83[ASN][1000 genomes]
rs2121659	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2166718	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34343083	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6810526	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6811850	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6819990	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6844742	0.81[ASN][1000 genomes]
rs6845219	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7664916	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7687637	0.85[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:30729200-30746200	Weak transcription	NH-A	brain
8	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:30732600-30746200	Weak transcription	NHEK	skin
11	chr4:30737200-30746000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:30737400-30746200	Weak transcription	Fetal Stomach	stomach
13	chr4:30737400-30748200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:30737600-30744600	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:30737600-30745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:30737800-30744400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:30738000-30745200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
20	chr4:30739800-30752000	Weak transcription	Aorta	Aorta
21	chr4:30741200-30741800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links