Variant report

Variant	rs1374650
Chromosome Location	chr4:30820766-30820767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10025293	0.85[EUR][1000 genomes]
rs10027054	0.84[EUR][1000 genomes]
rs10517216	1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs11721555	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11723028	0.90[ASN][1000 genomes]
rs11941127	0.81[ASN][1000 genomes]
rs11946238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509289	0.87[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12513276	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13135261	0.95[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs13138213	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13145415	0.83[TSI][hapmap]
rs1345147	0.84[EUR][1000 genomes]
rs1348923	0.83[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1374651	0.92[ASN][1000 genomes]
rs1374652	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs1374654	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447371	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16884042	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs16884047	0.81[ASN][1000 genomes]
rs16884163	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1823196	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs1823197	0.87[CEU][hapmap];0.80[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs1900571	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2029202	0.83[ASN][1000 genomes]
rs2121656	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2121659	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs2166718	0.83[ASN][1000 genomes]
rs34211313	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6810526	0.95[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6811850	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs6819990	0.95[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs6842641	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6842866	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6844742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845219	0.83[ASN][1000 genomes]
rs7664916	0.83[ASN][1000 genomes]
rs7682792	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7687637	0.84[ASN][1000 genomes]
rs7700046	0.88[YRI][hapmap]
rs958274	0.87[CEU][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30817600-30824000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:30818000-30823000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:30818600-30823600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30819000-30821600	Enhancers	Fetal Heart	heart
7	chr4:30819600-30820800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr4:30819600-30821600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:30819800-30820800	Weak transcription	Ovary	ovary
10	chr4:30819800-30821000	Weak transcription	Fetal Lung	lung
11	chr4:30819800-30821400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:30820000-30820800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr4:30820000-30821800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:30820200-30820800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:30820400-30821200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:30820400-30824600	Weak transcription	Aorta	Aorta

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