Variant report

Variant	rs10027054
Chromosome Location	chr4:30844220-30844221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10025293	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946238	0.84[EUR][1000 genomes]
rs12509289	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12513276	0.86[EUR][1000 genomes]
rs1345147	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374650	0.84[EUR][1000 genomes]
rs1374654	0.83[EUR][1000 genomes]
rs1447371	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884163	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1823196	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1823197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900571	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2121656	0.89[EUR][1000 genomes]
rs34211313	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6842641	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6842866	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6844742	0.84[EUR][1000 genomes]
rs7682792	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs958274	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30838800-30848600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30839200-30848600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:30840200-30846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:30840400-30845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:30840600-30848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:30841400-30849800	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:30841800-30844400	Enhancers	Fetal Heart	heart
8	chr4:30842000-30854400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:30842400-30846000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:30842400-30846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:30842400-30849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:30842400-30855200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:30842600-30845800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:30842600-30848400	Weak transcription	Fetal Lung	lung
15	chr4:30842600-30854600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:30842600-30855800	Weak transcription	Aorta	Aorta
17	chr4:30843400-30845600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:30843400-30846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:30843800-30845600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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