Variant report

Variant	rs16884163
Chromosome Location	chr4:30838176-30838177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10025293	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10027054	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10517216	0.80[ASN][1000 genomes]
rs11946238	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12509289	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513276	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1345147	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374650	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1374651	0.80[ASN][1000 genomes]
rs1374652	0.80[ASN][1000 genomes]
rs1374654	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1447371	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823196	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1823197	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1900571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121656	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2121659	0.80[ASN][1000 genomes]
rs34211313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842866	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844742	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7682792	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958274	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
2	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
5	chr4:30835200-30838400	Weak transcription	Left Ventricle	heart
6	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:30835400-30838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:30836400-30838600	Weak transcription	Fetal Lung	lung
9	chr4:30836600-30842400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:30837000-30838400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:30837000-30839400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr4:30837200-30838200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr4:30837200-30838400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:30837200-30838400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:30837200-30838600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:30837200-30839200	Enhancers	Colon Smooth Muscle	Colon
17	chr4:30837200-30841600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr4:30837200-30841600	Weak transcription	Aorta	Aorta
19	chr4:30837200-30841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:30837200-30841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:30837200-30843400	Enhancers	Hela-S3	cervix
22	chr4:30837400-30838400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:30837400-30838400	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:30837400-30838600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:30837400-30841200	Weak transcription	Right Ventricle	heart
26	chr4:30837600-30838800	Enhancers	HSMM	muscle
27	chr4:30837600-30839000	Enhancers	Muscle Satellite Cultured Cells	--
28	chr4:30837800-30838200	Enhancers	HSMMtube	muscle
29	chr4:30837800-30839200	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:30837800-30840200	Enhancers	NH-A	brain
31	chr4:30838000-30840600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:30838000-30840600	Enhancers	HUES6 Cell Line	embryonic stem cell

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