Variant report

Variant	rs1374651
Chromosome Location	chr4:30785457-30785458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10517216	0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11721555	0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11723028	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11941127	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11946238	0.92[ASN][1000 genomes]
rs12509289	0.80[ASN][1000 genomes]
rs13135261	0.89[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1374650	0.92[ASN][1000 genomes]
rs1374652	0.89[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374654	0.98[ASN][1000 genomes]
rs1447371	0.80[ASN][1000 genomes]
rs1550896	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16884042	0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884047	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884163	0.80[ASN][1000 genomes]
rs1900571	0.80[ASN][1000 genomes]
rs2029202	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121656	0.94[ASN][1000 genomes]
rs2121659	0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166718	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34211313	0.80[ASN][1000 genomes]
rs34343083	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6810526	0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6811850	0.89[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819990	0.89[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820160	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6820710	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6842866	0.80[ASN][1000 genomes]
rs6844742	0.92[ASN][1000 genomes]
rs6845219	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7664916	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7682792	0.80[ASN][1000 genomes]
rs7687637	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7700046	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs958274	0.80[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30771200-30789400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30779200-30787800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:30779200-30790600	Weak transcription	Fetal Lung	lung
4	chr4:30784600-30790600	Weak transcription	Aorta	Aorta
5	chr4:30784800-30785600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:30785000-30785600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:30785200-30785800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:30785200-30785800	Enhancers	Colon Smooth Muscle	Colon
9	chr4:30785400-30785600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:30785400-30785800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:30785400-30785800	Enhancers	Fetal Heart	heart
12	chr4:30785400-30785800	Enhancers	Ovary	ovary
13	chr4:30785400-30786000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:30785400-30790800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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