Variant report

Variant	rs34343083
Chromosome Location	chr4:30761032-30761033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10517216	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11721555	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11723028	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11941127	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13135261	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13143986	0.80[EUR][1000 genomes]
rs1374651	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1374652	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1550896	0.81[EUR][1000 genomes]
rs16884042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2029202	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2121659	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2166718	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810526	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6811850	0.84[EUR][1000 genomes]
rs6819990	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6820160	0.81[EUR][1000 genomes]
rs6820710	0.81[EUR][1000 genomes]
rs6845219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7664916	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7687637	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
3	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
4	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30757200-30765400	Weak transcription	Fetal Stomach	stomach
6	chr4:30757400-30761400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30757400-30765200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30759000-30762000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:30759000-30762400	Weak transcription	Aorta	Aorta
10	chr4:30759000-30765400	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:30759600-30761600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:30759600-30761600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:30759800-30761600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:30759800-30761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:30759800-30762400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:30760000-30761800	Weak transcription	Hela-S3	cervix
18	chr4:30760000-30762200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:30760000-30764600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:30760200-30762200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:30760400-30762400	Weak transcription	HMEC	breast
22	chr4:30760400-30762400	Weak transcription	NHEK	skin
23	chr4:30760400-30765400	Weak transcription	NHLF	lung
24	chr4:30760400-30766800	Weak transcription	Fetal Heart	heart
25	chr4:30760400-30768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:30760400-30769000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:30760800-30763000	Enhancers	HUVEC	blood vessel

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