Variant report

Variant	rs34297806
Chromosome Location	chr4:30890058-30890059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr4:30889833-30890076	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000250624	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11934243	0.89[ASN][1000 genomes]
rs11938996	0.89[ASN][1000 genomes]
rs11946165	0.89[ASN][1000 genomes]
rs12503052	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13137577	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13144831	0.89[ASN][1000 genomes]
rs13149475	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150083	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13150968	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152756	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1823196	0.86[ASN][1000 genomes]
rs34410526	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35186637	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35309740	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35363488	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35509507	0.89[ASN][1000 genomes]
rs35805877	0.89[ASN][1000 genomes]
rs35857516	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36173628	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4269140	0.89[ASN][1000 genomes]
rs4293757	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4305479	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55982008	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56037166	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56190579	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56338231	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551461	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792864	0.82[AMR][1000 genomes]
rs61794484	0.89[ASN][1000 genomes]
rs61794485	0.89[ASN][1000 genomes]
rs61794488	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61795879	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61795880	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61795883	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6811147	0.89[ASN][1000 genomes]
rs6811465	0.89[ASN][1000 genomes]
rs6839111	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6842171	0.89[ASN][1000 genomes]
rs6842574	0.87[ASN][1000 genomes]
rs6842896	0.89[ASN][1000 genomes]
rs6856866	0.89[ASN][1000 genomes]
rs73108238	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674446	0.89[ASN][1000 genomes]
rs9992704	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
4	chr4:30889600-30890400	Enhancers	Fetal Heart	heart

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