Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12503052	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13137577	0.83[EUR][1000 genomes]
rs13149475	0.83[EUR][1000 genomes]
rs13150083	0.82[EUR][1000 genomes]
rs13150968	0.81[EUR][1000 genomes]
rs13152756	0.84[EUR][1000 genomes]
rs34297806	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34410526	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35186637	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35309740	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35857516	0.84[EUR][1000 genomes]
rs36173628	0.83[EUR][1000 genomes]
rs4293757	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4305479	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55982008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56037166	0.82[EUR][1000 genomes]
rs56190579	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60551461	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61792864	0.81[EUR][1000 genomes]
rs61794488	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61795879	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61795880	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61795883	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73108238	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9992704	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
3	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
5	chr4:30922000-30935800	Weak transcription	Aorta	Aorta
6	chr4:30922400-30929400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:30922400-30929600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:30922400-30931400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:30922400-30933800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:30922600-30934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:30923400-30928200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:30923800-30930200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:30924200-30931400	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:30926400-30931400	Weak transcription	Fetal Intestine Large	intestine
15	chr4:30927000-30928200	Weak transcription	Fetal Intestine Small	intestine
16	chr4:30927600-30929600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:30927600-30929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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