Variant report

Variant	rs6856866
Chromosome Location	chr4:30887146-30887147
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11934243	0.96[ASN][1000 genomes]
rs11938996	0.96[ASN][1000 genomes]
rs11946165	0.96[ASN][1000 genomes]
rs12503052	0.86[ASN][1000 genomes]
rs13137577	0.89[ASN][1000 genomes]
rs13144831	0.96[ASN][1000 genomes]
rs13149475	0.89[ASN][1000 genomes]
rs13150083	0.89[ASN][1000 genomes]
rs13150968	0.89[ASN][1000 genomes]
rs13152756	0.89[ASN][1000 genomes]
rs34297806	0.89[ASN][1000 genomes]
rs34410526	0.89[ASN][1000 genomes]
rs35186637	0.84[ASN][1000 genomes]
rs35309740	0.89[ASN][1000 genomes]
rs35363488	0.89[ASN][1000 genomes]
rs35509507	0.96[ASN][1000 genomes]
rs35805877	0.87[ASN][1000 genomes]
rs35857516	0.89[ASN][1000 genomes]
rs36173628	0.89[ASN][1000 genomes]
rs4269140	0.96[ASN][1000 genomes]
rs4305479	0.89[ASN][1000 genomes]
rs55982008	0.89[ASN][1000 genomes]
rs56037166	0.89[ASN][1000 genomes]
rs56338231	0.89[ASN][1000 genomes]
rs60551461	0.89[ASN][1000 genomes]
rs61794484	0.96[ASN][1000 genomes]
rs61794485	0.96[ASN][1000 genomes]
rs6811147	0.96[ASN][1000 genomes]
rs6811465	0.96[ASN][1000 genomes]
rs6842171	0.96[ASN][1000 genomes]
rs6842574	0.93[ASN][1000 genomes]
rs6842896	0.96[ASN][1000 genomes]
rs73108238	0.89[ASN][1000 genomes]
rs7674446	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv966258	chr4:30886100-30889434	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
4	chr4:30886600-30889600	Weak transcription	Fetal Heart	heart
5	chr4:30886800-30887200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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