Variant report

Variant	rs61796464
Chromosome Location	chr3:178892409-178892410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178883467..178885785-chr3:178891482..178893959,2	K562	blood:
2	chr3:178891781..178894758-chr3:178901909..178904636,2	MCF-7	breast:
3	chr3:178892192..178894702-chr3:178896410..178899147,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10936993	0.96[EUR][1000 genomes]
rs12486399	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12497857	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13320527	0.96[EUR][1000 genomes]
rs1517585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2865084	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28697961	0.96[EUR][1000 genomes]
rs45455192	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4854906	0.96[EUR][1000 genomes]
rs4854940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4854955	0.96[EUR][1000 genomes]
rs4854976	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4855094	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60713157	0.83[EUR][1000 genomes]
rs61404287	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61796465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61796466	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61796467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61798205	0.83[EUR][1000 genomes]
rs61798206	0.83[EUR][1000 genomes]
rs61798207	0.83[EUR][1000 genomes]
rs61798211	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61798213	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6443623	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6791215	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6804195	0.83[EUR][1000 genomes]
rs73051979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054091	0.92[EUR][1000 genomes]
rs7374077	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7615259	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs950486	0.96[EUR][1000 genomes]
rs9758036	0.83[EUR][1000 genomes]
rs9812252	0.96[EUR][1000 genomes]
rs9819654	0.96[EUR][1000 genomes]
rs9823044	0.96[EUR][1000 genomes]
rs9833206	0.96[EUR][1000 genomes]
rs9860843	0.98[EUR][1000 genomes]
rs9872959	0.96[EUR][1000 genomes]
rs9878005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178867800-178900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:178868600-178893000	Weak transcription	Aorta	Aorta
3	chr3:178869200-178898000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:178870800-178896400	Weak transcription	K562	blood
5	chr3:178877400-178897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:178879400-178896400	Weak transcription	Right Atrium	heart
7	chr3:178879600-178896400	Weak transcription	Left Ventricle	heart
8	chr3:178883600-178893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:178883800-178905800	Weak transcription	Fetal Kidney	kidney
10	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
11	chr3:178888000-178898800	Weak transcription	Fetal Brain Male	brain
12	chr3:178888800-178896800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:178890800-178896600	Weak transcription	Fetal Lung	lung
14	chr3:178891400-178893400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:178891600-178894000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:178891800-178893000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr3:178891800-178893400	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:178891800-178893400	Enhancers	GM12878-XiMat	blood
19	chr3:178891800-178894200	Enhancers	Primary B cells from cord blood	blood
20	chr3:178891800-178894400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr3:178891800-178894600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:178892000-178893200	Enhancers	Primary T cells from cord blood	blood
23	chr3:178892200-178893000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:178892200-178893600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr3:178892200-178894000	Weak transcription	Lung	lung
26	chr3:178892200-178894200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:178892200-178896400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:178892400-178892600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:178892400-178893200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:178892400-178893400	Enhancers	HUVEC	blood vessel
31	chr3:178892400-178893600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr3:178892400-178894200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr3:178892400-178894400	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:178892400-178895800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr3:178892400-178896600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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