Variant report

Variant	rs9833206
Chromosome Location	chr3:178921747-178921748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178865505..178867284-chr3:178921537..178924390,2	MCF-7	breast:
2	chr3:178916179..178918433-chr3:178920259..178922667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229102	Chromatin interaction
ENSG00000121879	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10936993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486399	0.94[EUR][1000 genomes]
rs12497857	0.90[EUR][1000 genomes]
rs13320527	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517585	0.96[EUR][1000 genomes]
rs2865084	0.94[EUR][1000 genomes]
rs28697961	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45455192	1.00[EUR][1000 genomes]
rs4854906	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4854940	0.96[EUR][1000 genomes]
rs4854955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4854976	0.94[EUR][1000 genomes]
rs4855094	0.96[EUR][1000 genomes]
rs61404287	0.90[EUR][1000 genomes]
rs61796464	0.96[EUR][1000 genomes]
rs61796465	0.94[EUR][1000 genomes]
rs61796466	0.96[EUR][1000 genomes]
rs61796467	0.96[EUR][1000 genomes]
rs61798211	0.90[EUR][1000 genomes]
rs61798213	0.90[EUR][1000 genomes]
rs6443623	0.94[EUR][1000 genomes]
rs6791215	0.90[EUR][1000 genomes]
rs73051979	0.96[EUR][1000 genomes]
rs73054091	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7374077	0.86[EUR][1000 genomes]
rs7615259	0.94[EUR][1000 genomes]
rs950486	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9812252	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9819654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9823044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9860843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9872959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878005	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv822352	chr3:178921550-178922281	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv822354	chr3:178921558-178922273	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv822355	chr3:178921567-178922273	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv819800	chr3:178921571-178922335	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv822356	chr3:178921574-178922273	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv822357	chr3:178921574-178922281	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv822358	chr3:178921580-178922273	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178899200-178951800	Weak transcription	K562	blood
2	chr3:178900000-178929800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:178906400-178962400	Weak transcription	HepG2	liver
4	chr3:178908000-178923600	Weak transcription	Fetal Brain Female	brain
5	chr3:178908800-178922800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:178909000-178931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:178909000-178947000	Weak transcription	Ovary	ovary
8	chr3:178909400-178925400	Weak transcription	Aorta	Aorta
9	chr3:178911200-178953400	Weak transcription	Gastric	stomach
10	chr3:178912400-178924000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:178912400-178978600	Weak transcription	Right Ventricle	heart
12	chr3:178912600-178947800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:178913000-178925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:178913000-178925400	Weak transcription	Pancreas	Pancrea
15	chr3:178913000-178930800	Weak transcription	Left Ventricle	heart
16	chr3:178913000-178948200	Weak transcription	Psoas Muscle	Psoas
17	chr3:178913200-178945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:178913200-178947000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:178913200-178947000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:178913800-178954000	Weak transcription	Fetal Heart	heart
21	chr3:178913800-178969000	Weak transcription	Small Intestine	intestine
22	chr3:178914000-178928200	Weak transcription	Brain Hippocampus Middle	brain
23	chr3:178914200-178928000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:178914200-178928000	Weak transcription	Brain Substantia Nigra	brain
25	chr3:178914200-178928200	Weak transcription	Brain Anterior Caudate	brain
26	chr3:178914600-178945200	Weak transcription	HMEC	breast
27	chr3:178914800-178921800	Weak transcription	Fetal Brain Male	brain
28	chr3:178914800-178922000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:178914800-178926400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:178914800-178927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:178914800-178927800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:178914800-178928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr3:178914800-178928000	Weak transcription	Colon Smooth Muscle	Colon
34	chr3:178914800-178928000	Weak transcription	Osteobl	bone
35	chr3:178914800-178928200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:178914800-178933400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:178914800-178941400	Weak transcription	GM12878-XiMat	blood
38	chr3:178914800-178942800	Weak transcription	NH-A	brain
39	chr3:178914800-178948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr3:178914800-178972800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr3:178915400-178923400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:178915400-178929400	Weak transcription	HSMMtube	muscle
43	chr3:178915400-178931000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:178915400-178946000	Weak transcription	Stomach Mucosa	stomach
45	chr3:178915400-178947000	Weak transcription	NHDF-Ad	bronchial
46	chr3:178915600-178921800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:178915600-178947600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:178915800-178965200	Weak transcription	Hela-S3	cervix
49	chr3:178916600-178924000	Strong transcription	Dnd41	blood
50	chr3:178916600-178925800	Strong transcription	Monocytes-CD14+_RO01746	blood

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