Variant report

Variant	rs61796760
Chromosome Location	chr3:158508012-158508013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:158377143..158378334-chr3:158507371..158508028,4	K562	blood:
2	chr3:158390132..158390860-chr3:158507437..158508252,3	MCF-7	breast:
3	chr3:158445761..158447477-chr3:158506240..158508381,2	MCF-7	breast:
4	chr3:158444819..158446221-chr3:158506227..158508035,16	MCF-7	breast:
5	chr3:158362236..158365683-chr3:158505400..158510880,4	K562	blood:
6	chr3:158390341..158391012-chr3:158507103..158508308,4	MCF-7	breast:
7	chr3:158439700..158441570-chr3:158506353..158508207,2	MCF-7	breast:
8	chr3:158440212..158445123-chr3:158504371..158509203,7	MCF-7	breast:
9	chr3:158256966..158258990-chr3:158506924..158509258,2	MCF-7	breast:
10	chr3:158442646..158445031-chr3:158506699..158509425,2	MCF-7	breast:
11	chr3:158445121..158446196-chr3:158507024..158508414,15	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168827	Chromatin interaction
ENSG00000079257	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12489730	0.83[ASN][1000 genomes]
rs12491877	0.83[ASN][1000 genomes]
rs12495962	0.85[ASN][1000 genomes]
rs12497488	0.85[ASN][1000 genomes]
rs1430413	0.85[ASN][1000 genomes]
rs1430414	0.85[ASN][1000 genomes]
rs1560417	0.85[ASN][1000 genomes]
rs1560418	0.85[ASN][1000 genomes]
rs17643252	0.82[ASN][1000 genomes]
rs17643483	0.82[ASN][1000 genomes]
rs17643581	0.82[ASN][1000 genomes]
rs17643860	0.85[ASN][1000 genomes]
rs17699997	0.82[ASN][1000 genomes]
rs17700475	0.85[ASN][1000 genomes]
rs2566347	0.85[ASN][1000 genomes]
rs34690420	0.85[ASN][1000 genomes]
rs3863076	0.85[ASN][1000 genomes]
rs55678388	0.82[ASN][1000 genomes]
rs55705231	0.83[ASN][1000 genomes]
rs55717824	0.83[ASN][1000 genomes]
rs56023805	0.85[ASN][1000 genomes]
rs56078503	0.83[ASN][1000 genomes]
rs56105525	0.85[ASN][1000 genomes]
rs56152025	0.82[ASN][1000 genomes]
rs56235582	0.83[ASN][1000 genomes]
rs56261306	0.85[ASN][1000 genomes]
rs56318834	0.82[ASN][1000 genomes]
rs57262841	0.85[ASN][1000 genomes]
rs59163359	0.85[ASN][1000 genomes]
rs60203196	0.85[ASN][1000 genomes]
rs61138408	0.85[ASN][1000 genomes]
rs61794798	0.82[ASN][1000 genomes]
rs61794799	0.82[ASN][1000 genomes]
rs61794818	0.83[ASN][1000 genomes]
rs61794821	0.83[ASN][1000 genomes]
rs61794822	0.85[ASN][1000 genomes]
rs61794833	0.85[ASN][1000 genomes]
rs61794834	0.85[ASN][1000 genomes]
rs61794835	0.86[ASN][1000 genomes]
rs61794858	0.85[ASN][1000 genomes]
rs61794859	0.85[ASN][1000 genomes]
rs61796762	0.85[ASN][1000 genomes]
rs61796764	0.83[ASN][1000 genomes]
rs61796766	0.98[ASN][1000 genomes]
rs61796768	0.83[ASN][1000 genomes]
rs61796770	0.83[ASN][1000 genomes]
rs6441221	0.82[ASN][1000 genomes]
rs6761989	0.85[ASN][1000 genomes]
rs6783610	0.82[ASN][1000 genomes]
rs6792908	0.85[ASN][1000 genomes]
rs73158361	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1014255	chr3:158358860-158768542	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv532665	chr3:158370013-158754245	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv948755	chr3:158388780-158672287	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv877692	chr3:158430706-158828643	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv1001450	chr3:158440011-158768399	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv536777	chr3:158440011-158768399	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv877693	chr3:158470321-158583004	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv1006146	chr3:158475824-158625778	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv592123	chr3:158477796-158625128	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv1002514	chr3:158484027-158673414	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv536778	chr3:158484027-158673414	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158486800-158518200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:158489200-158508800	Weak transcription	Primary T cells from cord blood	blood
3	chr3:158492200-158510600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:158495600-158508600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:158501600-158508800	Weak transcription	Fetal Stomach	stomach
6	chr3:158501600-158508800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:158502800-158508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:158506400-158508400	Weak transcription	Hela-S3	cervix
9	chr3:158506400-158508600	Weak transcription	HUVEC	blood vessel
10	chr3:158506400-158508800	Weak transcription	NH-A	brain
11	chr3:158506600-158508800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:158507200-158508400	Weak transcription	Fetal Lung	lung
13	chr3:158507200-158508800	Weak transcription	NHDF-Ad	bronchial
14	chr3:158507200-158509600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:158507200-158510400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:158507400-158508600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:158507400-158508800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:158507400-158508800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:158507400-158510000	Weak transcription	NHLF	lung
20	chr3:158507600-158508600	Enhancers	K562	blood
21	chr3:158507600-158508600	Weak transcription	Osteobl	bone
22	chr3:158507600-158508800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:158507800-158508200	Weak transcription	A549	lung
24	chr3:158508000-158508400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links