Variant report

Variant	rs61797572
Chromosome Location	chr3:120191881-120191882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4676787	0.84[AFR][1000 genomes]
rs4676788	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4676791	1.00[ASN][1000 genomes]
rs55752646	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805634	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1012127	chr3:120015620-120272893	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv536707	chr3:120015620-120272893	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120186000-120195000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr3:120186600-120193800	Enhancers	NHDF-Ad	bronchial
3	chr3:120186600-120195000	Enhancers	Placenta	Placenta
4	chr3:120187400-120193200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:120187400-120193800	Enhancers	HSMM	muscle
6	chr3:120187800-120193600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:120187800-120193800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:120188400-120192000	Enhancers	NHLF	lung
9	chr3:120189200-120194000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:120189200-120194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:120189200-120194800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:120190000-120192200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:120190000-120193400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:120190000-120196200	Weak transcription	Left Ventricle	heart
15	chr3:120190200-120193200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:120190200-120194600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:120190400-120192400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:120190600-120194000	Enhancers	Osteobl	bone
19	chr3:120190800-120193000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:120190800-120194000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr3:120191000-120192800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:120191200-120192200	Weak transcription	Fetal Heart	heart
23	chr3:120191200-120192400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:120191200-120194600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:120191400-120192600	Weak transcription	NH-A	brain
26	chr3:120191600-120192200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:120191800-120192000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:120191800-120192200	Flanking Active TSS	HSMMtube	muscle
29	chr3:120191800-120195600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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