Variant report

Variant	rs6805634
Chromosome Location	chr3:120150295-120150296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:120144896..120146989-chr3:120150144..120153389,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13326852	0.87[ASN][1000 genomes]
rs61797572	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1012127	chr3:120015620-120272893	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv536707	chr3:120015620-120272893	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120115800-120151000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:120135400-120151600	Genic enhancers	Osteobl	bone
3	chr3:120137400-120162200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:120137800-120161600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:120138200-120154200	Weak transcription	HMEC	breast
6	chr3:120138200-120157200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:120138200-120162000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:120138200-120167800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:120138200-120169200	Weak transcription	Gastric	stomach
10	chr3:120138400-120155600	Weak transcription	Esophagus	oesophagus
11	chr3:120138800-120150600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:120140800-120154200	Weak transcription	Psoas Muscle	Psoas
13	chr3:120141200-120150800	Weak transcription	Brain Angular Gyrus	brain
14	chr3:120142000-120153600	Genic enhancers	NHLF	lung
15	chr3:120142400-120153600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:120143600-120154200	Genic enhancers	NH-A	brain
17	chr3:120144400-120152600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:120144400-120165800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:120145400-120157600	Weak transcription	Fetal Brain Female	brain
20	chr3:120145600-120150600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:120145600-120153800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:120145800-120168800	Weak transcription	Pancreas	Pancrea
23	chr3:120146400-120150400	Strong transcription	Fetal Intestine Large	intestine
24	chr3:120146400-120150600	Weak transcription	Fetal Kidney	kidney
25	chr3:120146400-120152400	Weak transcription	NHEK	skin
26	chr3:120146600-120151600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr3:120146800-120157800	Weak transcription	Fetal Brain Male	brain
28	chr3:120147000-120154400	Genic enhancers	HSMMtube	muscle
29	chr3:120147200-120151200	Weak transcription	Lung	lung
30	chr3:120147200-120154400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:120147600-120153200	Genic enhancers	HSMM	muscle
32	chr3:120147600-120154000	Genic enhancers	Muscle Satellite Cultured Cells	--
33	chr3:120147600-120154200	Weak transcription	Fetal Intestine Small	intestine
34	chr3:120148000-120151200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:120148000-120151600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:120148000-120153600	Enhancers	Fetal Heart	heart
37	chr3:120148000-120161000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:120148200-120150400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:120148200-120151000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:120148200-120151000	Weak transcription	Left Ventricle	heart
41	chr3:120148200-120151200	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:120148200-120151600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:120148600-120150600	Weak transcription	Aorta	Aorta
44	chr3:120149000-120150400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:120149000-120150400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:120149000-120150400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:120149000-120150600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr3:120149000-120150600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:120149000-120150800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:120149000-120151000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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