Variant report

Variant	rs61800587
Chromosome Location	chr1:165392570-165392571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10918178	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1128977	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41424948	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4657437	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61800588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6676763	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
2	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
6	chr1:165385600-165393600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:165389200-165393600	Weak transcription	Right Atrium	heart
8	chr1:165389200-165393800	Weak transcription	Left Ventricle	heart
9	chr1:165389400-165392600	Weak transcription	Esophagus	oesophagus
10	chr1:165389400-165394000	Weak transcription	Fetal Intestine Small	intestine
11	chr1:165390000-165393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165390200-165393600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:165390800-165393200	Enhancers	Psoas Muscle	Psoas
14	chr1:165391200-165393800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:165391400-165393800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:165392000-165392800	Enhancers	Lung	lung
17	chr1:165392000-165393400	Enhancers	Adipose Nuclei	Adipose
18	chr1:165392000-165393400	Enhancers	Fetal Lung	lung
19	chr1:165392200-165392600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:165392200-165392600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:165392200-165392800	Enhancers	Fetal Muscle Trunk	muscle
22	chr1:165392200-165392800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:165392200-165393400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr1:165392200-165393400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr1:165392200-165393600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr1:165392200-165393600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr1:165392200-165393600	Enhancers	Brain Anterior Caudate	brain
28	chr1:165392200-165393600	Enhancers	Ovary	ovary
29	chr1:165392400-165392800	Weak transcription	Spleen	Spleen
30	chr1:165392400-165393400	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr1:165392400-165393400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:165392400-165393600	Enhancers	Fetal Muscle Leg	muscle

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