The 2.0 version of rSNPBase

Variant report

Variant rs61800588
Chromosome Location chr1:165392669-165392670
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165376400-165393400 Weak transcription Brain Hippocampus Middle brain
2 chr1:165378000-165399600 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:165379400-165393800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr1:165380400-165394000 Weak transcription Right Ventricle heart
5 chr1:165385600-165393600 Weak transcription Brain Inferior Temporal Lobe brain
6 chr1:165389200-165393600 Weak transcription Right Atrium heart
7 chr1:165389200-165393800 Weak transcription Left Ventricle heart
8 chr1:165389400-165394000 Weak transcription Fetal Intestine Small intestine
9 chr1:165390000-165393200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:165390200-165393600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:165390800-165393200 Enhancers Psoas Muscle Psoas
12 chr1:165391200-165393800 Enhancers Skeletal Muscle Male skeletal muscle
13 chr1:165391400-165393800 Enhancers Skeletal Muscle Female skeletal muscle
14 chr1:165392000-165392800 Enhancers Lung lung
15 chr1:165392000-165393400 Enhancers Adipose Nuclei Adipose
16 chr1:165392000-165393400 Enhancers Fetal Lung lung
17 chr1:165392200-165392800 Enhancers Fetal Muscle Trunk muscle
18 chr1:165392200-165392800 Enhancers Sigmoid Colon Sigmoid Colon
19 chr1:165392200-165393400 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr1:165392200-165393400 Enhancers Primary T helper cells fromperipheralblood blood
21 chr1:165392200-165393600 Enhancers Primary T cells fromperipheralblood blood
22 chr1:165392200-165393600 Enhancers Primary T helper naive cells fromperipheralblood blood
23 chr1:165392200-165393600 Enhancers Brain Anterior Caudate brain
24 chr1:165392200-165393600 Enhancers Ovary ovary
25 chr1:165392400-165392800 Weak transcription Spleen Spleen
26 chr1:165392400-165393400 Enhancers Primary T helper cells PMA-I stimulated --
27 chr1:165392400-165393400 Weak transcription Stomach Smooth Muscle stomach
28 chr1:165392400-165393600 Enhancers Fetal Muscle Leg muscle
29 chr1:165392600-165392800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:165392600-165392800 Enhancers Brain Substantia Nigra brain
31 chr1:165392600-165392800 Enhancers Esophagus oesophagus
32 chr1:165392600-165393000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:165392600-165393400 Enhancers Primary T helper 17 cells PMA-I stimulated --
34 chr1:165392600-165393400 Weak transcription Brain Cingulate Gyrus brain
35 chr1:165392600-165393600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
36 chr1:165392600-165393800 Enhancers Primary T killer naive cells fromperipheralblood blood
37 chr1:165392600-165394600 Enhancers Placenta Placenta

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Last update: Aug 31, 2015