Variant report

Variant	rs61800604
Chromosome Location	chr1:165475099-165475100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1409414	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17406242	0.84[EUR][1000 genomes]
rs17414421	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61800605	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61800606	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61800629	0.81[EUR][1000 genomes]
rs72692043	0.84[EUR][1000 genomes]
rs7513272	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7517990	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7521108	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7527551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7543329	0.84[EUR][1000 genomes]
rs7549782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165466800-165479600	Weak transcription	Fetal Heart	heart
2	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165472200-165476800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:165472200-165477400	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links