Variant report

Variant	rs17406242
Chromosome Location	chr1:165477953-165477954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1409414	0.82[EUR][1000 genomes]
rs17407838	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17408354	0.86[AMR][1000 genomes]
rs17414421	0.82[EUR][1000 genomes]
rs17415428	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41267556	0.82[AMR][1000 genomes]
rs61800604	0.84[EUR][1000 genomes]
rs61800605	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61800606	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61800629	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61800650	0.82[AMR][1000 genomes]
rs61800652	0.82[AMR][1000 genomes]
rs61800653	0.82[AMR][1000 genomes]
rs61800654	0.82[AMR][1000 genomes]
rs61804063	0.86[AMR][1000 genomes]
rs61804064	0.86[AMR][1000 genomes]
rs61804065	0.86[AMR][1000 genomes]
rs61804066	0.82[AMR][1000 genomes]
rs6662536	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6676948	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72692043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72693832	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7512192	0.82[AMR][1000 genomes]
rs7513272	0.82[EUR][1000 genomes]
rs7517990	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7521108	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7527551	0.84[EUR][1000 genomes]
rs7543329	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7549782	0.84[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165466800-165479600	Weak transcription	Fetal Heart	heart
2	chr1:165467600-165483200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165476800-165478000	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:165477800-165479200	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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