Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17406242	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17407838	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17408354	1.00[GIH][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes]
rs41267556	0.91[AMR][1000 genomes]
rs61800605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61800606	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61800629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61800650	0.91[AMR][1000 genomes]
rs61800652	0.91[AMR][1000 genomes]
rs61800653	0.91[AMR][1000 genomes]
rs61800654	0.91[AMR][1000 genomes]
rs61804063	0.86[AMR][1000 genomes]
rs61804064	0.86[AMR][1000 genomes]
rs61804065	0.86[AMR][1000 genomes]
rs61804066	0.82[AMR][1000 genomes]
rs6662536	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6676948	1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72692043	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72693832	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7355084	1.00[GIH][hapmap]
rs7512192	0.91[AMR][1000 genomes]
rs7517990	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7521108	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7527551	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7543329	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7549782	1.00[MEX][hapmap];0.85[TSI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17415428	MPZ	cis	cerebellum	SCAN
rs17415428	FCGR3A	cis	cerebellum	SCAN
rs17415428	FCGR3A	cis	parietal	SCAN
rs17415428	DDR2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165501600-165508600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:165502600-165508800	Weak transcription	Right Ventricle	heart
3	chr1:165502800-165508400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:165503600-165507000	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:165503600-165509000	Weak transcription	Psoas Muscle	Psoas
6	chr1:165503600-165509000	Weak transcription	Right Atrium	heart
7	chr1:165504000-165505400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr1:165504200-165508400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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