Variant report

Variant	rs6676948
Chromosome Location	chr1:165533075-165533076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165523032..165525688-chr1:165531841..165534696,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17406242	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17407838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17408354	0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17415428	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41267556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61800629	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61800650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61800652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61800653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61800654	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61804063	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61804064	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61804065	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61804066	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6662536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72692043	0.80[EUR][1000 genomes]
rs72693832	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7355084	0.86[CEU][hapmap];1.00[GIH][hapmap]
rs7512192	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7527551	1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7543329	0.80[EUR][1000 genomes]
rs7549782	1.00[MEX][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165530800-165533600	Weak transcription	Left Ventricle	heart
2	chr1:165530800-165533800	Weak transcription	Right Atrium	heart
3	chr1:165531000-165534200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165531200-165534000	Weak transcription	Right Ventricle	heart
5	chr1:165531400-165533800	Weak transcription	Fetal Heart	heart

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