Variant report

Variant	rs61802998
Chromosome Location	chr1:161591542-161591543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:161590935-161591981	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr1:161591520-161591670	HPAF	blood vessel:	n/a	n/a
3	YY1	chr1:161591036-161591763	H1-hESC	embryonic stem cell:	n/a	chr1:161591185-161591207
4	REST	chr1:161591124-161591732	A549	lung:	n/a	n/a
5	CHD2	chr1:161591301-161591669	K562	blood:	n/a	n/a
6	ELF1	chr1:161591192-161591701	GM12878	blood:	n/a	n/a
7	CTCF	chr1:161591133-161591711	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr1:161591440-161591590	HCPEpiC	choroid plexus:	n/a	n/a
9	GATA2	chr1:161591274-161591718	HUVEC	blood vessel:	n/a	n/a
10	E2F6	chr1:161591395-161591709	A549	lung:	n/a	n/a
11	USF1	chr1:161591244-161591722	A549	lung:	n/a	n/a
12	RCOR1	chr1:161591380-161591684	GM12878	blood:	n/a	n/a
13	ARID3A	chr1:161591125-161591710	K562	blood:	n/a	n/a
14	ETS1	chr1:161591301-161591651	K562	blood:	n/a	n/a
15	ZNF263	chr1:161591212-161591642	HEK293-T-REx	kidney:	n/a	n/a
16	POU5F1	chr1:161591211-161591711	H1-hESC	embryonic stem cell:	n/a	n/a
17	MTA3	chr1:161591099-161592163	GM12878	blood:	n/a	n/a
18	NRF1	chr1:161591267-161591605	H1-hESC	embryonic stem cell:	n/a	n/a
19	TCF7L2	chr1:161591315-161591558	Hela-S3	cervix:	n/a	n/a
20	IKZF1	chr1:161591399-161591858	GM12878	blood:	n/a	n/a
21	WRNIP1	chr1:161591298-161591751	GM12878	blood:	n/a	n/a
22	POLR2A	chr1:161591136-161592258	K562	blood:	n/a	n/a
23	PML	chr1:161590993-161591860	GM12878	blood:	n/a	n/a
24	ATF3	chr1:161591136-161591847	A549	lung:	n/a	n/a
25	MTA3	chr1:161591286-161591698	GM12878	blood:	n/a	n/a
26	RFX5	chr1:161591305-161591649	Hela-S3	cervix:	n/a	n/a
27	TBL1XR1	chr1:161591238-161591729	GM12878	blood:	n/a	n/a
28	GABPA	chr1:161591399-161591623	A549	lung:	n/a	n/a
29	MAX	chr1:161591330-161591733	H1-hESC	embryonic stem cell:	n/a	chr1:161591589-161591596
30	POU2F2	chr1:161590935-161591805	GM12891	blood:	n/a	chr1:161590999-161591012
31	TAF1	chr1:161591027-161591617	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF2	chr1:161591168-161591695	GM12878	blood:	n/a	n/a
33	ATF3	chr1:161591029-161591868	A549	lung:	n/a	n/a
34	TAF7	chr1:161591123-161591605	H1-hESC	embryonic stem cell:	n/a	n/a
35	RPC155	chr1:161591241-161591798	K562	blood:	n/a	n/a
36	MAX	chr1:161591284-161591694	Hela-S3	cervix:	n/a	chr1:161591589-161591596
37	JUND	chr1:161591289-161591698	H1-hESC	embryonic stem cell:	n/a	n/a
38	MAFK	chr1:161590976-161592260	K562	blood:	n/a	chr1:161591072-161591081 chr1:161591070-161591086 chr1:161591075-161591086 chr1:161591074-161591085 chr1:161591070-161591085 chr1:161591112-161591128 chr1:161591108-161591125
39	CHD1	chr1:161591358-161591715	GM12878	blood:	n/a	n/a
40	RUNX3	chr1:161591141-161592315	GM12878	blood:	n/a	n/a
41	ZMIZ1	chr1:161591281-161591658	K562	blood:	n/a	n/a
42	EP300	chr1:161591263-161591842	GM12878	blood:	n/a	n/a
43	POLR2A	chr1:161591026-161591561	GM12891	blood:	n/a	n/a
44	ATF2	chr1:161591188-161591748	GM12878	blood:	n/a	n/a
45	ELK1	chr1:161591362-161591652	GM12878	blood:	n/a	n/a
46	REST	chr1:161591187-161591706	K562	blood:	n/a	n/a
47	MAX	chr1:161591376-161591692	H1-hESC	embryonic stem cell:	n/a	chr1:161591589-161591596
48	NFATC1	chr1:161591097-161591766	GM12878	blood:	n/a	n/a
49	YY1	chr1:161591359-161591589	HCT-116	colon:	n/a	n/a
50	CTCF	chr1:161591480-161591630	AG09319	gingival:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:161591008..161595787-chr1:161695155..161699954,5	K562	blood:
2	chr1:161591472..161593367-chr1:161719465..161721558,2	K562	blood:
3	chr1:161557663..161559310-chr1:161591501..161593148,2	K562	blood:
4	chr1:161509609..161513548-chr1:161589499..161593604,6	K562	blood:
5	chr1:161591405..161593904-chr1:161697560..161699954,2	K562	blood:

Variant related genes	Relation type
RPS23P9	TF binding region
ENSG00000081721	Chromatin interaction
ENSG00000162746	Chromatin interaction

Extended variants
information (count: 216 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2085694	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34160304	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34416533	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34566209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34881159	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35181127	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35674644	0.99[EUR][1000 genomes]
rs36063867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36117182	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61802329	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61802332	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61802333	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61802334	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61802996	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67295569	0.93[EUR][1000 genomes]
rs72704050	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:200 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv432998	chr1:161335902-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
3	nsv433009	chr1:161343927-161639328	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
4	esv2756866	chr1:161344255-161681552	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	esv2758972	chr1:161344255-161681552	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
6	nsv433020	chr1:161355634-161673682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
7	esv2754329	chr1:161355728-161673682	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
8	nsv433031	chr1:161355728-161673682	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
9	nsv433042	chr1:161372038-161673682	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv433053	chr1:161389417-161673682	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv433075	chr1:161395555-161673682	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv831725	chr1:161403030-161666732	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	esv2757757	chr1:161406313-161624427	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
14	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
15	esv1821964	chr1:161410458-161642332	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	esv1812323	chr1:161413114-161624425	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
17	esv1814016	chr1:161413114-161624425	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv427841	chr1:161413114-161624425	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
19	nsv831736	chr1:161413123-161624424	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
20	esv1824713	chr1:161414555-161642332	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
21	esv1821631	chr1:161414640-161644896	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	esv2750812	chr1:161463498-161639559	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
23	esv2752696	chr1:161463498-161639559	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
24	esv2750813	chr1:161463498-161673682	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
25	esv2750814	chr1:161463498-161673682	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
26	esv2755678	chr1:161463498-161678377	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	esv2752664	chr1:161463601-161673682	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	esv2756399	chr1:161463814-161639559	Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv433086	chr1:161465420-161639559	Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	esv1799809	chr1:161467963-161650576	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
31	esv1819152	chr1:161473564-161647435	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
32	esv1813267	chr1:161473564-161650576	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
33	esv1815625	chr1:161475983-161650576	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
34	esv1850573	chr1:161475983-161650576	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
35	nsv1007723	chr1:161476489-161638501	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv8502	chr1:161477348-161646550	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
37	nsv1005277	chr1:161478524-161638501	Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	esv2763869	chr1:161478536-161638530	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
40	nsv433097	chr1:161478751-161639559	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	esv1815003	chr1:161479291-161647435	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
42	esv1808606	chr1:161479291-161649074	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
43	esv1805208	chr1:161479438-161648225	Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
44	nsv519779	chr1:161479745-161638386	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
45	nsv464173	chr1:161479745-161646807	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
46	nsv825176	chr1:161479845-161646878	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
47	nsv820341	chr1:161479845-161648148	Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
48	esv1814148	chr1:161479861-161644896	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
49	esv1844518	chr1:161479861-161646722	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
50	esv12861	chr1:161479945-161646758	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs61802998	HSPA6	Cis_1M	lymphoblastoid	RTeQTL
rs61802998	FCRLA	Cis_1M	lymphoblastoid	RTeQTL
rs61802998	FCGR2A	Cis_1M	lymphoblastoid	RTeQTL
rs61802998	FCGR2B	cis	Whole Blood	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161590400-161591800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:161590400-161592000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr1:161590400-161592000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr1:161590400-161592200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr1:161590400-161592200	Active TSS	A549	lung
6	chr1:161590600-161591600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:161590600-161591600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:161590600-161591800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:161590600-161591800	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:161590600-161591800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:161590600-161591800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:161590600-161591800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:161590600-161591800	Active TSS	Brain Angular Gyrus	brain
14	chr1:161590600-161591800	Active TSS	Brain Anterior Caudate	brain
15	chr1:161590600-161591800	Active TSS	HMEC	breast
16	chr1:161590600-161592000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr1:161590600-161592000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:161590600-161592000	Active TSS	Hela-S3	cervix
19	chr1:161590600-161592200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr1:161590600-161592200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr1:161590600-161592200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr1:161590600-161592200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr1:161590600-161592200	Active TSS	NH-A	brain
24	chr1:161590800-161591600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr1:161590800-161591600	Active TSS	Muscle Satellite Cultured Cells	--
26	chr1:161590800-161591600	Active TSS	Fetal Brain Male	brain
27	chr1:161590800-161591600	Active TSS	NHDF-Ad	bronchial
28	chr1:161590800-161591600	Active TSS	Osteobl	bone
29	chr1:161590800-161591800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr1:161590800-161591800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:161590800-161591800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:161590800-161591800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:161590800-161591800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:161590800-161591800	Flanking Active TSS	Primary B cells from peripheral blood	blood
35	chr1:161590800-161591800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:161590800-161591800	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr1:161590800-161591800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:161590800-161591800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:161590800-161591800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
40	chr1:161590800-161591800	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr1:161590800-161591800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:161590800-161591800	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr1:161590800-161591800	Bivalent/Poised TSS	Fetal Stomach	stomach
44	chr1:161590800-161591800	Active TSS	HSMMtube	muscle
45	chr1:161590800-161591800	Active TSS	NHEK	skin
46	chr1:161590800-161592000	Bivalent/Poised TSS	Fetal Lung	lung
47	chr1:161590800-161592000	Active TSS	K562	blood
48	chr1:161590800-161592200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:161591000-161591600	Active TSS	Aorta	Aorta
50	chr1:161591000-161591600	Active TSS	Brain Substantia Nigra	brain

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