The 2.0 version of rSNPBase

Variant report

Variant rs61808980
Chromosome Location chr1:169445410-169445411
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169429600-169448200 Weak transcription Fetal Heart heart
2 chr1:169429800-169446400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:169430000-169445600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:169430000-169445600 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr1:169430000-169446200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr1:169430000-169446200 Weak transcription Muscle Satellite Cultured Cells --
7 chr1:169430000-169446200 Weak transcription Cortex derived primary cultured neurospheres brain
8 chr1:169430000-169446400 Weak transcription HUVEC blood vessel
9 chr1:169430000-169450000 Weak transcription Pancreatic Islets Pancreatic Islet
10 chr1:169430000-169452000 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr1:169430000-169452000 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:169430000-169452600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:169430000-169452800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:169430000-169452800 Weak transcription Brain Germinal Matrix brain
15 chr1:169430000-169452800 Weak transcription HMEC breast
16 chr1:169430000-169452800 Weak transcription NHDF-Ad bronchial
17 chr1:169430000-169452800 Weak transcription NHEK skin
18 chr1:169430000-169453400 Weak transcription Colonic Mucosa Colon
19 chr1:169430000-169453800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr1:169430000-169454000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
21 chr1:169430000-169454400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:169430000-169454400 Weak transcription Spleen Spleen
23 chr1:169430200-169445600 Weak transcription Fetal Intestine Small intestine
24 chr1:169430200-169445600 Weak transcription Fetal Stomach stomach
25 chr1:169430200-169446200 Weak transcription Fetal Muscle Trunk muscle
26 chr1:169430200-169446200 Weak transcription Fetal Muscle Leg muscle
27 chr1:169430200-169446200 Weak transcription Lung lung
28 chr1:169430200-169446200 Weak transcription Pancreas Pancrea
29 chr1:169430200-169446400 Weak transcription Thymus Thymus
30 chr1:169430200-169450600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr1:169430200-169451800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:169430200-169452600 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr1:169430200-169452600 Weak transcription NH-A brain
34 chr1:169430200-169453200 Weak transcription Esophagus oesophagus
35 chr1:169430600-169446200 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr1:169430600-169446200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr1:169430600-169452800 Weak transcription Small Intestine intestine
38 chr1:169430800-169446200 Weak transcription Brain Hippocampus Middle brain
39 chr1:169431200-169446800 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr1:169431200-169452000 Weak transcription GM12878-XiMat blood
41 chr1:169431400-169446200 Weak transcription Fetal Brain Male brain
42 chr1:169434600-169452600 Weak transcription Primary B cells from cord blood blood
43 chr1:169435200-169448400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:169435200-169452800 Weak transcription Fetal Kidney kidney
45 chr1:169435600-169445600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr1:169435600-169446200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr1:169435600-169449200 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:169437200-169446000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
49 chr1:169437200-169446000 Weak transcription Colon Smooth Muscle Colon
50 chr1:169437400-169446000 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015