Variant report

Variant	rs61815361
Chromosome Location	chr1:171186860-171186861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171182864..171185763-chr1:171186408..171189341,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12402732	0.83[EUR][1000 genomes]
rs16864125	0.81[ASN][1000 genomes]
rs16864174	0.88[EUR][1000 genomes]
rs16864177	0.88[EUR][1000 genomes]
rs16864194	0.88[EUR][1000 genomes]
rs16864216	0.83[EUR][1000 genomes]
rs2020863	0.88[EUR][1000 genomes]
rs2049920	0.88[EUR][1000 genomes]
rs2072755	0.88[EUR][1000 genomes]
rs2075988	0.87[EUR][1000 genomes]
rs2179106	0.83[EUR][1000 genomes]
rs28369845	0.83[EUR][1000 genomes]
rs28369881	0.83[EUR][1000 genomes]
rs28369891	0.87[EUR][1000 genomes]
rs28369914	0.88[EUR][1000 genomes]
rs56370691	0.92[EUR][1000 genomes]
rs57305992	0.83[EUR][1000 genomes]
rs61815421	0.83[EUR][1000 genomes]
rs72712655	1.00[AFR][1000 genomes]
rs72714112	0.81[ASN][1000 genomes]
rs72714167	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831882	chr1:171166224-171326083	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171167200-171187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:171169800-171189800	Weak transcription	Right Atrium	heart
3	chr1:171178200-171187200	Weak transcription	Aorta	Aorta
4	chr1:171179800-171187600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:171179800-171187800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:171180600-171187000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:171181000-171187800	Weak transcription	Fetal Lung	lung
8	chr1:171182800-171187800	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:171183000-171187200	Weak transcription	Adipose Nuclei	Adipose
10	chr1:171183000-171189800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:171183400-171189800	Weak transcription	Left Ventricle	heart
12	chr1:171183600-171187200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:171183600-171187200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:171183600-171187800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:171184000-171187800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:171184200-171187800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:171184600-171187200	Weak transcription	Gastric	stomach
18	chr1:171185400-171189000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:171185800-171189200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:171186600-171189000	Enhancers	NHEK	skin
21	chr1:171186600-171189200	Enhancers	HMEC	breast
22	chr1:171186800-171187000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
23	chr1:171186800-171188800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr1:171186800-171189200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr1:171186800-171189600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:171186800-171190200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:171186800-171190200	Enhancers	Placenta	Placenta

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