Variant report

Variant	rs16864194
Chromosome Location	chr1:171179351-171179352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10912616	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12065544	0.91[ASN][1000 genomes]
rs12402732	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12403890	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12720462	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16864174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864177	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864216	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1987921	0.94[ASN][1000 genomes]
rs1987944	0.94[ASN][1000 genomes]
rs2020863	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2064077	0.93[ASN][1000 genomes]
rs2072755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075988	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179106	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28369845	0.94[EUR][1000 genomes]
rs28369881	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs28369891	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28369914	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861947	0.91[ASN][1000 genomes]
rs4622096	0.80[ASN][1000 genomes]
rs4631734	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56370691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57305992	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815361	0.88[EUR][1000 genomes]
rs61815363	0.94[ASN][1000 genomes]
rs61815421	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815423	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815424	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815425	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61815427	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72714167	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7535210	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7551934	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831882	chr1:171166224-171326083	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1817255	chr1:171170733-171185865	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171156600-171179600	Weak transcription	NHLF	lung
2	chr1:171156800-171179600	Weak transcription	Right Ventricle	heart
3	chr1:171166000-171184000	Weak transcription	Gastric	stomach
4	chr1:171167200-171187800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:171169800-171189800	Weak transcription	Right Atrium	heart
6	chr1:171171400-171179400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:171176800-171179400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:171177400-171179400	Weak transcription	Fetal Lung	lung
9	chr1:171177800-171183600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:171178000-171183200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:171178200-171179400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:171178200-171180800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:171178200-171182600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:171178200-171187200	Weak transcription	Aorta	Aorta
15	chr1:171178400-171179400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:171178600-171179800	Enhancers	Liver	Liver
17	chr1:171178600-171181000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr1:171178600-171181600	Enhancers	Adipose Nuclei	Adipose
19	chr1:171178600-171182800	Weak transcription	Left Ventricle	heart
20	chr1:171178800-171179400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:171178800-171179600	Enhancers	Stomach Mucosa	stomach
22	chr1:171178800-171180600	Enhancers	Fetal Intestine Large	intestine
23	chr1:171179000-171179600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:171179000-171179600	Enhancers	Duodenum Mucosa	Duodenum
25	chr1:171179000-171179800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:171179000-171179800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:171179000-171180600	Enhancers	Fetal Intestine Small	intestine
28	chr1:171179200-171179600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:171179200-171179800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr1:171179200-171180600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr1:171179200-171180600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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