Variant report

Variant	rs3861947
Chromosome Location	chr1:171194284-171194285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10912616	0.97[ASN][1000 genomes]
rs12065544	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12402732	0.97[ASN][1000 genomes]
rs12403890	0.97[ASN][1000 genomes]
rs12720462	0.96[ASN][1000 genomes]
rs16864174	0.91[ASN][1000 genomes]
rs16864177	0.91[ASN][1000 genomes]
rs16864194	0.91[ASN][1000 genomes]
rs16864216	0.97[ASN][1000 genomes]
rs1987921	0.97[ASN][1000 genomes]
rs1987944	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2020863	0.91[ASN][1000 genomes]
rs2049920	0.91[ASN][1000 genomes]
rs2064077	0.96[ASN][1000 genomes]
rs2072755	0.91[ASN][1000 genomes]
rs2075988	0.91[ASN][1000 genomes]
rs2179106	0.97[ASN][1000 genomes]
rs28369891	0.91[ASN][1000 genomes]
rs28369914	0.91[ASN][1000 genomes]
rs4073692	0.82[ASN][1000 genomes]
rs4073693	0.81[ASN][1000 genomes]
rs4622096	0.84[ASN][1000 genomes]
rs4631734	0.95[ASN][1000 genomes]
rs56370691	0.95[ASN][1000 genomes]
rs57305992	0.97[ASN][1000 genomes]
rs61815363	0.97[ASN][1000 genomes]
rs61815421	0.97[ASN][1000 genomes]
rs61815423	0.97[ASN][1000 genomes]
rs61815424	0.97[ASN][1000 genomes]
rs61815425	0.97[ASN][1000 genomes]
rs61815427	0.97[ASN][1000 genomes]
rs72714167	0.97[ASN][1000 genomes]
rs7535210	0.96[ASN][1000 genomes]
rs7551934	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv831882	chr1:171166224-171326083	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171191400-171197200	Weak transcription	Fetal Kidney	kidney
2	chr1:171191800-171195600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:171192600-171195600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:171192800-171195600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:171193800-171195600	Weak transcription	Fetal Lung	lung
6	chr1:171194200-171195400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:171194200-171200400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links