The 2.0 version of rSNPBase

Variant report

Variant rs61819560
Chromosome Location chr1:214578544-214578545
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
2 chr1:214557800-214589000 Weak transcription Rectal Smooth Muscle rectum
3 chr1:214558200-214584000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr1:214560000-214592000 Weak transcription Hela-S3 cervix
5 chr1:214567000-214587600 Weak transcription HepG2 liver
6 chr1:214567600-214584000 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:214568400-214579200 Weak transcription Gastric stomach
8 chr1:214570800-214579200 Weak transcription Pancreas Pancrea
9 chr1:214571800-214578600 Strong transcription Fetal Stomach stomach
10 chr1:214572600-214612600 Weak transcription Fetal Intestine Small intestine
11 chr1:214573400-214579400 Genic enhancers Osteobl bone
12 chr1:214573600-214578600 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:214573800-214591000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:214574600-214588200 Weak transcription Aorta Aorta
15 chr1:214575000-214584000 Weak transcription Fetal Lung lung
16 chr1:214575000-214589400 Weak transcription Colon Smooth Muscle Colon
17 chr1:214575200-214583200 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr1:214575200-214589000 Weak transcription Stomach Smooth Muscle stomach
19 chr1:214575200-214591200 Weak transcription Ovary ovary
20 chr1:214575200-214592000 Weak transcription Placenta Placenta
21 chr1:214575200-214595800 Weak transcription Fetal Kidney kidney
22 chr1:214575400-214584000 Weak transcription Fetal Muscle Trunk muscle
23 chr1:214575800-214579000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:214576000-214578600 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
25 chr1:214576000-214578600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
26 chr1:214576000-214578800 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr1:214576000-214579400 Genic enhancers Breast Myoepithelial Primary Cells Breast
28 chr1:214576000-214579600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:214576200-214579800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
30 chr1:214576400-214579400 Enhancers HUES6 Cell Line embryonic stem cell
31 chr1:214576400-214581800 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr1:214576600-214578600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:214576600-214578600 Enhancers Lung lung
34 chr1:214576600-214579600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr1:214576600-214582400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:214576600-214583800 Weak transcription HSMMtube muscle
37 chr1:214576800-214578800 Enhancers NHLF lung
38 chr1:214576800-214579000 Enhancers HUES48 Cell Line embryonic stem cell
39 chr1:214576800-214579400 Enhancers H1 Cell Line embryonic stem cell
40 chr1:214576800-214579400 Enhancers HUES64 Cell Line embryonic stem cell
41 chr1:214576800-214589000 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:214576800-214612200 Weak transcription Fetal Intestine Large intestine
43 chr1:214577000-214578800 Enhancers NHDF-Ad bronchial
44 chr1:214577000-214579000 Enhancers iPS-20b Cell Line embryonic stem cell
45 chr1:214577000-214579000 Enhancers HMEC breast
46 chr1:214577000-214579400 Enhancers ES-I3 Cell Line embryonic stem cell
47 chr1:214577000-214589400 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr1:214577200-214578800 Enhancers Primary hematopoietic stem cells short term culture blood
49 chr1:214577200-214579000 Enhancers iPS-15b Cell Line embryonic stem cell
50 chr1:214577200-214583800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015