The 2.0 version of rSNPBase

Variant report

Variant rs61819564
Chromosome Location chr1:214583952-214583953
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:214529000-214584200 Weak transcription Brain Anterior Caudate brain
2 chr1:214557800-214589000 Weak transcription Rectal Smooth Muscle rectum
3 chr1:214558200-214584000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr1:214560000-214592000 Weak transcription Hela-S3 cervix
5 chr1:214567000-214587600 Weak transcription HepG2 liver
6 chr1:214567600-214584000 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:214572600-214612600 Weak transcription Fetal Intestine Small intestine
8 chr1:214573800-214591000 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:214574600-214588200 Weak transcription Aorta Aorta
10 chr1:214575000-214584000 Weak transcription Fetal Lung lung
11 chr1:214575000-214589400 Weak transcription Colon Smooth Muscle Colon
12 chr1:214575200-214589000 Weak transcription Stomach Smooth Muscle stomach
13 chr1:214575200-214591200 Weak transcription Ovary ovary
14 chr1:214575200-214592000 Weak transcription Placenta Placenta
15 chr1:214575200-214595800 Weak transcription Fetal Kidney kidney
16 chr1:214575400-214584000 Weak transcription Fetal Muscle Trunk muscle
17 chr1:214576800-214589000 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:214576800-214612200 Weak transcription Fetal Intestine Large intestine
19 chr1:214577000-214589400 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:214577400-214589000 Weak transcription Psoas Muscle Psoas
21 chr1:214577400-214591200 Weak transcription Left Ventricle heart
22 chr1:214577600-214586800 Weak transcription Primary hematopoietic stem cells blood
23 chr1:214578600-214584000 Weak transcription A549 lung
24 chr1:214578600-214585800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr1:214578600-214586200 Strong transcription HSMM muscle
26 chr1:214578600-214589000 Weak transcription Right Ventricle heart
27 chr1:214578600-214591200 Weak transcription Esophagus oesophagus
28 chr1:214578600-214591400 Weak transcription Fetal Stomach stomach
29 chr1:214578800-214584000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:214578800-214588200 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:214578800-214589400 Weak transcription NHLF lung
32 chr1:214578800-214592600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:214578800-214592800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr1:214579000-214588800 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr1:214579000-214589400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:214579400-214584000 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr1:214579400-214585600 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:214579400-214586200 Strong transcription HMEC breast
39 chr1:214579400-214591200 Weak transcription H1 Cell Line embryonic stem cell
40 chr1:214580400-214588000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:214581400-214584600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr1:214581400-214584600 Strong transcription Muscle Satellite Cultured Cells --
43 chr1:214581400-214601200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr1:214581800-214585200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:214581800-214586600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:214582000-214584000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:214582000-214585400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr1:214582000-214588800 Strong transcription Osteobl bone
49 chr1:214582200-214585400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr1:214582400-214584000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015