Variant report

Variant	rs61819727
Chromosome Location	chr1:157981942-157981943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:157980406..157983368-chr1:157988556..157991541,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1925034	1.00[ASN][1000 genomes]
rs6681075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157965800-157983200	Weak transcription	Dnd41	blood
2	chr1:157968800-157982200	Enhancers	Placenta	Placenta
3	chr1:157969000-157988000	Weak transcription	Psoas Muscle	Psoas
4	chr1:157969800-157982200	Enhancers	Fetal Heart	heart
5	chr1:157975400-157982000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:157976200-157982000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:157976200-157982000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:157976200-157982600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:157976200-157982800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:157976400-157982000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:157976600-157982400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:157977000-157982000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:157977000-157983800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:157977200-157982000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:157977400-157982200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:157977400-157982200	Enhancers	Fetal Intestine Large	intestine
18	chr1:157978000-157982200	Enhancers	Aorta	Aorta
19	chr1:157978000-157982600	Enhancers	Fetal Kidney	kidney
20	chr1:157978600-157983200	Weak transcription	Small Intestine	intestine
21	chr1:157978800-157982000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:157979200-157982000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:157979200-157983200	Weak transcription	Brain Germinal Matrix	brain
24	chr1:157979800-157983400	Weak transcription	Thymus	Thymus
25	chr1:157979800-157991000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr1:157980400-157984600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr1:157980600-157982400	Enhancers	Adipose Nuclei	Adipose
28	chr1:157980600-157983200	Weak transcription	Fetal Brain Male	brain
29	chr1:157981000-157982200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:157981000-157982400	Enhancers	Fetal Stomach	stomach
31	chr1:157981000-157983200	Genic enhancers	NHEK	skin
32	chr1:157981200-157982000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:157981200-157982000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr1:157981200-157982200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:157981200-157982200	Enhancers	Spleen	Spleen
36	chr1:157981200-157982600	Enhancers	Fetal Lung	lung
37	chr1:157981200-157982800	Enhancers	HUVEC	blood vessel
38	chr1:157981200-157983000	Enhancers	HMEC	breast
39	chr1:157981200-157983800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr1:157981200-157984200	Enhancers	Ovary	ovary
41	chr1:157981200-157985400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:157981200-157987200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:157981400-157982200	Enhancers	Brain Anterior Caudate	brain
44	chr1:157981400-157982200	Enhancers	Fetal Intestine Small	intestine
45	chr1:157981400-157982400	Enhancers	HSMMtube	muscle
46	chr1:157981400-157983000	Weak transcription	Fetal Brain Female	brain
47	chr1:157981400-157983000	Enhancers	NHDF-Ad	bronchial
48	chr1:157981400-157983400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:157981400-157983800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr1:157981400-157984000	Enhancers	Colon Smooth Muscle	Colon

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