Variant report

Variant	rs61820915
Chromosome Location	chr1:196428769-196428770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10494743	0.90[ASN][1000 genomes]
rs10754187	0.89[EUR][1000 genomes]
rs10754188	0.81[ASN][1000 genomes]
rs10801534	0.86[EUR][1000 genomes]
rs10801535	0.88[EUR][1000 genomes]
rs10801537	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10801538	0.93[ASN][1000 genomes]
rs10801539	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10922066	0.87[EUR][1000 genomes]
rs10922071	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10922073	0.80[ASN][1000 genomes]
rs10922075	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10922078	0.89[EUR][1000 genomes]
rs10922082	0.87[EUR][1000 genomes]
rs10922083	0.86[EUR][1000 genomes]
rs10922084	0.85[EUR][1000 genomes]
rs11807331	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12065463	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12069983	0.86[EUR][1000 genomes]
rs12069990	0.86[EUR][1000 genomes]
rs12123128	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12729649	0.85[EUR][1000 genomes]
rs12738109	0.84[EUR][1000 genomes]
rs1416962	0.80[ASN][1000 genomes]
rs1538685	0.86[EUR][1000 genomes]
rs1538687	0.86[EUR][1000 genomes]
rs2878557	0.86[EUR][1000 genomes]
rs2878558	0.86[EUR][1000 genomes]
rs3855964	0.86[EUR][1000 genomes]
rs3927686	0.86[EUR][1000 genomes]
rs3928857	0.84[EUR][1000 genomes]
rs60495441	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6678457	0.86[EUR][1000 genomes]
rs6696801	0.93[ASN][1000 genomes]
rs6697795	0.89[EUR][1000 genomes]
rs72732257	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72732259	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7531611	0.86[EUR][1000 genomes]
rs7550015	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196420000-196460800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:196421000-196433400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:196421800-196433400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:196422200-196432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:196425200-196433200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:196425400-196428800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:196425400-196428800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:196425400-196432800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:196425400-196433800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:196425400-196434000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:196425600-196433200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:196427800-196429200	Enhancers	Liver	Liver
13	chr1:196428400-196428800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:196428600-196428800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:196428600-196429000	Enhancers	Rectal Smooth Muscle	rectum
16	chr1:196428600-196429200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:196428600-196429200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links