Variant report

Variant	rs72732257
Chromosome Location	chr1:196457375-196457376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:196456315..196458347-chr1:196459943..196462362,2	K562	blood:
2	chr1:196450695..196453991-chr1:196455427..196457877,3	K562	blood:
3	chr1:196448856..196453298-chr1:196454594..196458706,6	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10494743	0.82[ASN][1000 genomes]
rs10754187	0.85[EUR][1000 genomes]
rs10754188	0.91[ASN][1000 genomes]
rs10801534	0.82[EUR][1000 genomes]
rs10801535	0.84[EUR][1000 genomes]
rs10801537	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10801539	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10922066	0.83[EUR][1000 genomes]
rs10922071	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10922073	0.92[ASN][1000 genomes]
rs10922075	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10922078	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10922082	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10922083	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10922084	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11576790	0.91[ASN][1000 genomes]
rs11807331	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12065463	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12065519	0.91[ASN][1000 genomes]
rs12069983	0.82[EUR][1000 genomes]
rs12069990	0.82[EUR][1000 genomes]
rs12123128	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12562176	0.84[ASN][1000 genomes]
rs12729649	0.81[EUR][1000 genomes]
rs1416962	0.92[ASN][1000 genomes]
rs1538685	0.82[EUR][1000 genomes]
rs1538687	0.82[EUR][1000 genomes]
rs1832617	0.85[ASN][1000 genomes]
rs2878557	0.82[EUR][1000 genomes]
rs2878558	0.82[EUR][1000 genomes]
rs3855964	0.82[EUR][1000 genomes]
rs3927686	0.82[EUR][1000 genomes]
rs3928857	0.80[EUR][1000 genomes]
rs4618911	0.84[ASN][1000 genomes]
rs4658039	0.84[ASN][1000 genomes]
rs60495441	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61820915	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6678457	0.82[EUR][1000 genomes]
rs6697795	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72732259	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7531611	0.82[EUR][1000 genomes]
rs7550015	0.82[EUR][1000 genomes]
rs869257	0.85[ASN][1000 genomes]
rs946755	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv947213	chr1:196456820-196460426	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196420000-196460800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr1:196434200-196459200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:196434600-196459600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:196436400-196485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:196437400-196467800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:196447400-196458200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:196447800-196468000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:196448400-196457600	Weak transcription	Fetal Kidney	kidney
9	chr1:196450000-196459800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:196450600-196462200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:196451200-196462200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:196451400-196467600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:196452800-196471200	Weak transcription	Liver	Liver
14	chr1:196454400-196467400	Weak transcription	Ovary	ovary

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