Variant report

Variant	rs1832617
Chromosome Location	chr1:196490964-196490965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196484305..196487565-chr1:196489232..196492751,3	K562	blood:
2	chr1:196479196..196481656-chr1:196490730..196492820,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10494743	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10754188	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10754195	0.81[EUR][1000 genomes]
rs10801538	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10801550	0.81[EUR][1000 genomes]
rs10922073	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10922075	0.86[ASN][1000 genomes]
rs10922078	0.92[ASN][1000 genomes]
rs10922082	0.91[ASN][1000 genomes]
rs10922083	0.91[ASN][1000 genomes]
rs10922084	0.89[ASN][1000 genomes]
rs11576790	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12034150	0.81[EUR][1000 genomes]
rs12065463	0.86[ASN][1000 genomes]
rs12065519	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12123128	0.88[ASN][1000 genomes]
rs12562176	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12727032	0.81[EUR][1000 genomes]
rs1416962	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4425932	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4462080	0.81[EUR][1000 genomes]
rs4618911	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4658039	0.99[ASN][1000 genomes]
rs60495441	0.91[ASN][1000 genomes]
rs6696801	0.90[EUR][1000 genomes]
rs6697795	0.91[ASN][1000 genomes]
rs72732257	0.85[ASN][1000 genomes]
rs72732259	0.82[ASN][1000 genomes]
rs7548553	0.81[EUR][1000 genomes]
rs869257	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946755	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196480800-196504800	Weak transcription	Liver	Liver
2	chr1:196486200-196491600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:196486200-196492200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:196486400-196492000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:196490200-196496000	Weak transcription	H1 Cell Line	embryonic stem cell

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