Variant report

Variant	rs4658039
Chromosome Location	chr1:196513323-196513324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10494743	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10737670	0.85[JPT][hapmap]
rs10754187	0.90[JPT][hapmap]
rs10754188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10754195	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs10754196	0.84[JPT][hapmap]
rs10801530	0.84[JPT][hapmap]
rs10801531	0.90[JPT][hapmap]
rs10801532	0.88[JPT][hapmap]
rs10801533	0.94[JPT][hapmap]
rs10801537	0.95[JPT][hapmap]
rs10801538	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10922071	0.81[CHB][hapmap]
rs10922073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10922075	0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10922078	0.91[ASN][1000 genomes]
rs10922082	0.81[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10922083	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10922084	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10922088	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs11576790	0.93[ASN][1000 genomes]
rs11807331	0.90[JPT][hapmap]
rs12034150	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12049567	0.95[JPT][hapmap]
rs12065463	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12065519	0.93[ASN][1000 genomes]
rs12069983	0.89[JPT][hapmap]
rs12069990	0.89[JPT][hapmap]
rs12123128	0.87[ASN][1000 genomes]
rs12562176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12727032	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12729649	0.85[JPT][hapmap]
rs1416962	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1538686	0.94[JPT][hapmap]
rs1538687	0.89[JPT][hapmap]
rs16840224	0.84[JPT][hapmap]
rs1769996	0.90[JPT][hapmap]
rs1832617	0.99[ASN][1000 genomes]
rs2027368	0.89[JPT][hapmap]
rs2878557	0.89[JPT][hapmap]
rs2878559	0.95[JPT][hapmap]
rs3855964	0.89[JPT][hapmap]
rs3927686	0.89[JPT][hapmap]
rs3928857	0.89[JPT][hapmap]
rs4425932	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4462080	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs4618911	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs60495441	0.90[ASN][1000 genomes]
rs6428349	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs6696801	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6697795	0.90[ASN][1000 genomes]
rs72732257	0.84[ASN][1000 genomes]
rs72732259	0.82[ASN][1000 genomes]
rs7515074	0.95[JPT][hapmap]
rs7527415	0.90[JPT][hapmap]
rs7531611	0.89[JPT][hapmap]
rs7535696	0.89[JPT][hapmap]
rs869257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9427622	0.94[JPT][hapmap]
rs946750	0.89[JPT][hapmap]
rs946755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9659527	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196509800-196515400	Weak transcription	Liver	Liver
2	chr1:196509800-196529600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:196512400-196514400	Weak transcription	Ovary	ovary
4	chr1:196513000-196514200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:196513000-196514200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:196513200-196522400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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