Variant report

Variant	rs9659527
Chromosome Location	chr1:196418527-196418528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196415350..196419645-chr1:196425384..196428727,4	K562	blood:
2	chr1:196410955..196413395-chr1:196417085..196419825,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10494743	0.88[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes]
rs10737670	0.82[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs10754187	0.82[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10754188	0.91[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs10754195	0.84[JPT][hapmap]
rs10801530	0.81[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10801531	0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10801532	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10801533	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10801534	0.91[ASN][1000 genomes]
rs10801535	0.92[ASN][1000 genomes]
rs10801537	0.90[JPT][hapmap]
rs10801538	0.88[CEU][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs10922066	0.92[ASN][1000 genomes]
rs10922067	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10922068	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10922073	0.91[CEU][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs10922075	0.89[JPT][hapmap]
rs10922082	0.88[JPT][hapmap]
rs10922083	0.94[JPT][hapmap]
rs10922084	0.90[JPT][hapmap]
rs10922088	0.84[JPT][hapmap]
rs11576790	0.84[EUR][1000 genomes]
rs11807331	0.84[JPT][hapmap]
rs12034150	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs12049567	0.81[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12065463	0.88[JPT][hapmap]
rs12065519	0.84[EUR][1000 genomes]
rs12069983	0.81[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12069990	0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12121250	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12562176	0.87[CEU][hapmap];0.94[JPT][hapmap]
rs12727032	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs12729649	0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs12738109	0.92[ASN][1000 genomes]
rs1416962	0.82[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1538684	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1538685	0.92[ASN][1000 genomes]
rs1538686	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1538687	0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1769996	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2027368	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2147469	0.81[ASN][1000 genomes]
rs2878557	0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs2878558	0.92[ASN][1000 genomes]
rs2878559	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35582782	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3855964	0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3927686	0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs3928857	0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4425932	0.84[JPT][hapmap]
rs4462080	0.84[JPT][hapmap]
rs4618911	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs4658039	0.95[JPT][hapmap]
rs6428349	0.82[CEU][hapmap];0.83[JPT][hapmap]
rs6678457	0.91[ASN][1000 genomes]
rs6696801	0.87[CEU][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs7515074	0.80[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7515472	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7527415	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7531611	0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7535696	0.86[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7550015	0.90[ASN][1000 genomes]
rs7551077	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs869257	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs9427622	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs946750	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs946755	0.88[CEU][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196411200-196420800	Enhancers	Liver	Liver
2	chr1:196417000-196421600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:196417200-196425000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:196417400-196419400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:196417400-196428600	Weak transcription	Ovary	ovary
6	chr1:196417600-196422200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:196418000-196420200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:196418200-196419600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:196418200-196419600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:196418200-196421600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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