Variant report

Variant	rs10922088
Chromosome Location	chr1:196552430-196552431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10494743	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10737670	0.89[JPT][hapmap]
rs10754187	0.90[JPT][hapmap]
rs10754188	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs10754195	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs10754196	0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10754198	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10801530	0.89[JPT][hapmap]
rs10801531	0.90[JPT][hapmap]
rs10801532	0.88[JPT][hapmap]
rs10801533	0.83[JPT][hapmap]
rs10801537	0.95[JPT][hapmap]
rs10801538	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs10801550	0.85[ASN][1000 genomes]
rs10801551	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10922071	0.80[CHB][hapmap]
rs10922073	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs10922075	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10922082	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10922083	0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes]
rs10922084	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs11807331	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12034150	0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs12049567	0.85[JPT][hapmap]
rs12061508	0.81[ASN][1000 genomes]
rs12065463	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs12069983	0.89[JPT][hapmap]
rs12069990	0.89[JPT][hapmap]
rs12562176	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs12727032	0.87[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12729649	0.89[JPT][hapmap]
rs1416962	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs1538686	0.83[JPT][hapmap]
rs1538687	0.89[JPT][hapmap]
rs16840224	0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1769996	0.90[JPT][hapmap]
rs2878557	0.89[JPT][hapmap]
rs2878559	0.85[JPT][hapmap]
rs3855964	0.89[JPT][hapmap]
rs3927686	0.89[JPT][hapmap]
rs3928857	0.89[JPT][hapmap]
rs4425932	0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4462080	0.87[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs4618911	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs4658039	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs61819890	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6428349	0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6680396	0.86[CHB][hapmap]
rs6696801	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7515074	0.85[JPT][hapmap]
rs7531611	0.89[JPT][hapmap]
rs7535696	0.89[JPT][hapmap]
rs7548553	0.90[ASN][1000 genomes]
rs869257	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9427622	0.83[JPT][hapmap]
rs946750	0.88[JPT][hapmap]
rs946755	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs9659527	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196527800-196559400	Weak transcription	Ovary	ovary
2	chr1:196541600-196553200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:196547800-196556200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:196547800-196559000	Weak transcription	Liver	Liver
5	chr1:196548200-196557400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:196548400-196557600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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