Variant report

Variant	rs61821035
Chromosome Location	chr1:176141441-176141442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:176139119..176142139-chr6:26032575..26034849,4	MCF-7	breast:
2	chr1:176139139..176142119-chr6:26031592..26033955,2	K562	blood:

Variant related genes	Relation type
ENSG00000137259	Chromatin interaction
ENSG00000124693	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12402588	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12403164	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12407451	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12408191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12408512	0.84[EUR][1000 genomes]
rs12409154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12411139	0.84[EUR][1000 genomes]
rs16849609	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17351760	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17351774	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17354043	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4265393	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4292913	0.81[AMR][1000 genomes]
rs4497165	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4498761	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55815340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56346636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57729493	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58539711	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59540069	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59801736	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60630667	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61820935	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61820936	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61820954	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61820962	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61820963	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61820964	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61820966	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61820969	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61820971	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61820976	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61821005	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61821006	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61821032	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61821033	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61821055	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61821058	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61821059	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61822660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61822661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61822663	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61822765	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61822766	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61822768	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74127162	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7553673	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823794	chr1:175869554-176311778	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv872562	chr1:175949646-176141866	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv872563	chr1:175949646-176184625	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv872565	chr1:176058782-176172795	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv8558	chr1:176135063-176141916	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:176055000-176141600	Weak transcription	Hela-S3	cervix
2	chr1:176065600-176154800	Weak transcription	Aorta	Aorta
3	chr1:176070400-176151400	Weak transcription	Pancreas	Pancrea
4	chr1:176085400-176142400	Weak transcription	Lung	lung
5	chr1:176100800-176153200	Weak transcription	Colonic Mucosa	Colon
6	chr1:176110600-176164000	Weak transcription	NHLF	lung
7	chr1:176116000-176146200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:176123800-176144200	Weak transcription	Left Ventricle	heart
9	chr1:176123800-176150000	Weak transcription	Osteobl	bone
10	chr1:176126400-176168800	Weak transcription	Small Intestine	intestine
11	chr1:176127000-176147000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:176127000-176174000	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:176127200-176153400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:176127400-176143200	Weak transcription	Brain Substantia Nigra	brain
15	chr1:176127400-176144200	Weak transcription	A549	lung
16	chr1:176127400-176153400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:176127400-176155400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:176128000-176144200	Weak transcription	Gastric	stomach
19	chr1:176128000-176147000	Weak transcription	Stomach Mucosa	stomach
20	chr1:176128000-176157800	Weak transcription	Spleen	Spleen
21	chr1:176128000-176175200	Weak transcription	Esophagus	oesophagus
22	chr1:176128400-176154600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:176128600-176147000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr1:176128600-176147200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:176128600-176155600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr1:176128800-176152800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:176128800-176152800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:176128800-176154200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:176130400-176141800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:176130400-176143200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:176130800-176141600	Weak transcription	Fetal Heart	heart
32	chr1:176131000-176143400	Weak transcription	NHDF-Ad	bronchial
33	chr1:176131000-176144000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr1:176131200-176141800	Weak transcription	HepG2	liver
35	chr1:176131400-176142600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:176131800-176143600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr1:176132200-176141600	Weak transcription	Placenta	Placenta
38	chr1:176132200-176154200	Weak transcription	NH-A	brain
39	chr1:176132400-176143400	Weak transcription	NHEK	skin
40	chr1:176134400-176152800	Weak transcription	Brain Angular Gyrus	brain
41	chr1:176135000-176142400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr1:176135200-176144600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:176136000-176141600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:176136200-176147400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:176136600-176141800	Weak transcription	Fetal Stomach	stomach
46	chr1:176137400-176173000	Weak transcription	Right Ventricle	heart
47	chr1:176137800-176142200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr1:176137800-176142200	Strong transcription	HSMM	muscle
49	chr1:176138200-176155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:176138600-176142600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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