Variant report

Variant	rs61824357
Chromosome Location	chr1:170455047-170455048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:170454919..170456946-chr1:170463210..170465319,2	K562	blood:

Variant related genes	Relation type
ENSG00000231407	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10919395	0.85[ASN][1000 genomes]
rs10919396	0.85[ASN][1000 genomes]
rs10919402	0.85[ASN][1000 genomes]
rs10919404	0.82[ASN][1000 genomes]
rs10919407	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10919422	0.87[ASN][1000 genomes]
rs11583564	0.87[ASN][1000 genomes]
rs11590710	0.86[ASN][1000 genomes]
rs11799550	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11806866	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811252	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12032644	0.85[ASN][1000 genomes]
rs12044404	0.85[ASN][1000 genomes]
rs12131734	0.85[ASN][1000 genomes]
rs12729774	0.87[ASN][1000 genomes]
rs12737862	0.86[ASN][1000 genomes]
rs12747498	0.90[ASN][1000 genomes]
rs12751882	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12755330	0.87[ASN][1000 genomes]
rs1333134	0.85[ASN][1000 genomes]
rs1333141	0.82[ASN][1000 genomes]
rs1333145	0.85[ASN][1000 genomes]
rs1333147	0.85[ASN][1000 genomes]
rs1333148	0.85[ASN][1000 genomes]
rs1333149	0.85[ASN][1000 genomes]
rs1537389	0.85[ASN][1000 genomes]
rs1537394	0.85[ASN][1000 genomes]
rs16863369	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1855220	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421324	0.85[ASN][1000 genomes]
rs34593046	0.86[ASN][1000 genomes]
rs34597697	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34621734	0.87[ASN][1000 genomes]
rs35299255	0.90[ASN][1000 genomes]
rs35329498	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35564609	0.87[ASN][1000 genomes]
rs35581791	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4397704	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4488075	0.90[ASN][1000 genomes]
rs59192532	0.84[AFR][1000 genomes]
rs61824337	0.86[ASN][1000 genomes]
rs61824349	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61824356	0.90[ASN][1000 genomes]
rs6427250	0.88[EUR][1000 genomes]
rs6427251	0.88[EUR][1000 genomes]
rs6663456	0.85[ASN][1000 genomes]
rs6668898	0.86[ASN][1000 genomes]
rs6691444	0.88[ASN][1000 genomes]
rs6695889	0.86[ASN][1000 genomes]
rs6699303	0.85[ASN][1000 genomes]
rs67243697	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72707650	0.88[EUR][1000 genomes]
rs73025646	0.93[AFR][1000 genomes]
rs73025663	0.93[AFR][1000 genomes]
rs73025679	0.93[AFR][1000 genomes]
rs73039088	0.90[AFR][1000 genomes]
rs7368078	0.88[ASN][1000 genomes]
rs7411842	0.88[ASN][1000 genomes]
rs7515690	0.87[ASN][1000 genomes]
rs7533882	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61824357	GORAB	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170450600-170455600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:170451200-170456600	Weak transcription	Dnd41	blood
3	chr1:170451200-170457200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links