Variant report
| Variant | rs73025679 |
|---|---|
| Chromosome Location | chr1:170473799-170473800 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:170471855..170474359-chr1:170499459..170501306,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231407 | Chromatin interaction |
| ENSG00000120370 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10919407 | 0.80[AFR][1000 genomes] |
| rs11806866 | 0.87[AFR][1000 genomes] |
| rs16863343 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16863357 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35329498 | 0.87[AFR][1000 genomes] |
| rs58664132 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59036409 | 0.85[EUR][1000 genomes] |
| rs59192532 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61824349 | 0.87[AFR][1000 genomes] |
| rs61824357 | 0.93[AFR][1000 genomes] |
| rs67243697 | 0.87[AFR][1000 genomes] |
| rs73025646 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73025663 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73033182 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73033187 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73033200 | 0.85[EUR][1000 genomes] |
| rs73035174 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73039040 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73039088 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872543 | chr1:170171083-170674903 | Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv533915 | chr1:170258766-170725296 | Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
