Variant report

Variant	rs61827917
Chromosome Location	chr1:210355955-210355956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210350899..210352953-chr1:210354578..210356622,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11119435	0.87[EUR][1000 genomes]
rs12060567	0.87[EUR][1000 genomes]
rs12087757	0.93[EUR][1000 genomes]
rs12094311	0.87[EUR][1000 genomes]
rs12404330	0.87[EUR][1000 genomes]
rs17188183	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17188190	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2015491	0.87[EUR][1000 genomes]
rs2205990	0.84[AMR][1000 genomes]
rs227185	0.84[AMR][1000 genomes]
rs227192	0.85[ASN][1000 genomes]
rs227208	0.84[AMR][1000 genomes]
rs227214	0.84[AMR][1000 genomes]
rs227215	0.81[AMR][1000 genomes]
rs2451693	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2484029	0.90[AMR][1000 genomes]
rs2494187	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2494188	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2743892	0.84[AMR][1000 genomes]
rs35318215	0.86[EUR][1000 genomes]
rs4844512	0.87[EUR][1000 genomes]
rs4844513	0.87[EUR][1000 genomes]
rs4844963	0.87[EUR][1000 genomes]
rs4844964	0.86[EUR][1000 genomes]
rs4844965	0.86[EUR][1000 genomes]
rs4844967	0.87[EUR][1000 genomes]
rs4844969	0.87[EUR][1000 genomes]
rs4844970	0.87[EUR][1000 genomes]
rs56100845	0.87[EUR][1000 genomes]
rs56178430	0.87[EUR][1000 genomes]
rs56193955	0.87[EUR][1000 genomes]
rs61820393	0.84[AMR][1000 genomes]
rs61827913	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827915	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827918	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827920	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827921	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827946	0.87[EUR][1000 genomes]
rs61827947	0.87[EUR][1000 genomes]
rs61827948	0.87[EUR][1000 genomes]
rs61827949	0.87[EUR][1000 genomes]
rs61827950	0.87[EUR][1000 genomes]
rs61827952	0.86[EUR][1000 genomes]
rs719034	0.81[AMR][1000 genomes]
rs846547	0.84[AMR][1000 genomes]
rs923561	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210339400-210361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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