Variant report

Variant	rs61827921
Chromosome Location	chr1:210361402-210361403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11119435	0.93[EUR][1000 genomes]
rs12060567	0.93[EUR][1000 genomes]
rs12087757	0.95[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12094311	0.93[EUR][1000 genomes]
rs12404330	0.93[EUR][1000 genomes]
rs17188183	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17188190	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2015491	0.93[EUR][1000 genomes]
rs227192	0.85[ASN][1000 genomes]
rs2451693	0.82[AMR][1000 genomes]
rs2484029	0.82[AMR][1000 genomes]
rs2494187	0.91[ASN][1000 genomes]
rs35318215	0.91[EUR][1000 genomes]
rs4844512	0.93[EUR][1000 genomes]
rs4844513	0.93[EUR][1000 genomes]
rs4844963	0.93[EUR][1000 genomes]
rs4844964	0.91[EUR][1000 genomes]
rs4844965	0.91[EUR][1000 genomes]
rs4844967	0.93[EUR][1000 genomes]
rs4844969	0.93[EUR][1000 genomes]
rs4844970	0.93[EUR][1000 genomes]
rs56100845	0.93[EUR][1000 genomes]
rs56178430	0.93[EUR][1000 genomes]
rs56193955	0.93[EUR][1000 genomes]
rs61827913	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61827915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827917	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827946	0.93[EUR][1000 genomes]
rs61827947	0.93[EUR][1000 genomes]
rs61827948	0.93[EUR][1000 genomes]
rs61827949	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61827950	0.93[EUR][1000 genomes]
rs61827952	0.92[EUR][1000 genomes]
rs923561	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210360000-210362400	Enhancers	HSMMtube	muscle
2	chr1:210360800-210362800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:210361000-210362200	Enhancers	HMEC	breast
4	chr1:210361000-210362400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:210361200-210362000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:210361200-210362400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:210361200-210362400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr1:210361200-210362400	Enhancers	HSMM	muscle
9	chr1:210361400-210362200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:210361400-210362200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:210361400-210362200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:210361400-210362200	Enhancers	NH-A	brain
13	chr1:210361400-210362200	Enhancers	Osteobl	bone
14	chr1:210361400-210362400	Enhancers	NHEK	skin
15	chr1:210361400-210363200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links