The 2.0 version of rSNPBase

Variant report

Variant rs61830433
Chromosome Location chr1:220362782-220362783
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220305400-220376600 Strong transcription Monocytes-CD14+_RO01746 blood
2 chr1:220325000-220398400 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr1:220330600-220363600 Weak transcription Fetal Brain Male brain
4 chr1:220330800-220378600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:220341200-220364000 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr1:220341200-220369200 Weak transcription Fetal Heart heart
7 chr1:220344800-220365600 Weak transcription Brain Substantia Nigra brain
8 chr1:220345400-220391400 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:220346600-220363600 Weak transcription Brain Angular Gyrus brain
10 chr1:220348000-220386800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr1:220349600-220369600 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:220350000-220386200 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr1:220350600-220387800 Weak transcription Stomach Mucosa stomach
14 chr1:220350800-220365200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr1:220350800-220365200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:220350800-220365200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:220350800-220365200 Weak transcription Fetal Brain Female brain
18 chr1:220350800-220365200 Weak transcription Spleen Spleen
19 chr1:220350800-220366000 Weak transcription Esophagus oesophagus
20 chr1:220350800-220378800 Weak transcription Pancreas Pancrea
21 chr1:220353200-220386600 Strong transcription HUES64 Cell Line embryonic stem cell
22 chr1:220353800-220386400 Strong transcription iPS-20b Cell Line embryonic stem cell
23 chr1:220354000-220368800 Strong transcription Fetal Thymus thymus
24 chr1:220354400-220375000 Strong transcription GM12878-XiMat blood
25 chr1:220354400-220386800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
26 chr1:220354600-220363600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:220354800-220363600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:220355000-220369600 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:220355200-220364400 Weak transcription Brain Anterior Caudate brain
30 chr1:220355200-220364400 Weak transcription Brain Cingulate Gyrus brain
31 chr1:220355200-220365000 Weak transcription Brain Hippocampus Middle brain
32 chr1:220355200-220371800 Weak transcription Psoas Muscle Psoas
33 chr1:220355200-220374000 Weak transcription Brain Germinal Matrix brain
34 chr1:220355400-220364400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:220355400-220364400 Weak transcription Fetal Intestine Small intestine
36 chr1:220355400-220374000 Weak transcription Right Ventricle heart
37 chr1:220355400-220378600 Weak transcription Gastric stomach
38 chr1:220355800-220363400 Weak transcription NHLF lung
39 chr1:220356000-220368400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr1:220356600-220365000 Weak transcription HepG2 liver
41 chr1:220356800-220364400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr1:220357000-220364400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:220358000-220376000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr1:220358000-220381600 Strong transcription HUES48 Cell Line embryonic stem cell
45 chr1:220358000-220382000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:220358200-220365800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr1:220358200-220368600 Strong transcription Adipose Nuclei Adipose
48 chr1:220358200-220369400 Strong transcription Primary T cells fromperipheralblood blood
49 chr1:220358200-220369400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:220358400-220369400 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015