Variant report

Variant	rs61832429
Chromosome Location	chr1:213136100-213136101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:213135474-213137103	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr1:213136059-213137119	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr1:213136022-213136225	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr1:213135090-213138279	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
VASH2	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs41309631	1.00[AFR][1000 genomes]
rs41309633	1.00[AFR][1000 genomes]
rs59489266	1.00[AFR][1000 genomes]
rs59676624	1.00[AFR][1000 genomes]
rs59755371	1.00[AFR][1000 genomes]
rs61385792	1.00[AFR][1000 genomes]
rs61832425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61832431	1.00[AFR][1000 genomes]
rs61832432	1.00[AFR][1000 genomes]
rs61832439	1.00[AFR][1000 genomes]
rs61832446	1.00[AMR][1000 genomes]
rs61834077	1.00[AMR][1000 genomes]
rs61834092	1.00[AMR][1000 genomes]
rs61834111	1.00[AMR][1000 genomes]
rs61834135	1.00[AMR][1000 genomes]
rs61834139	1.00[AMR][1000 genomes]
rs61834140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008594	chr1:213110654-213236750	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv11434	chr1:213131581-213156027	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213125600-213141000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:213125800-213141000	Weak transcription	A549	lung
3	chr1:213125800-213145800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:213126400-213152400	Strong transcription	Fetal Stomach	stomach
5	chr1:213126600-213140600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:213126800-213154400	Strong transcription	Fetal Brain Female	brain
7	chr1:213127000-213136400	Weak transcription	Fetal Brain Male	brain
8	chr1:213127000-213153200	Strong transcription	Fetal Lung	lung
9	chr1:213127400-213140800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:213128400-213140800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:213129000-213141600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:213129600-213139800	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr1:213130000-213153800	Weak transcription	Thymus	Thymus
14	chr1:213131200-213138000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:213131400-213139600	Weak transcription	Fetal Kidney	kidney
16	chr1:213131400-213153000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:213131600-213138600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:213131600-213139200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:213131600-213141000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:213131800-213139000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:213131800-213139200	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr1:213131800-213140000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:213132000-213139200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr1:213132000-213140400	Weak transcription	Fetal Thymus	thymus
25	chr1:213132000-213141400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:213132400-213140800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:213132600-213137000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:213133000-213139000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:213133000-213140600	Strong transcription	HSMMtube	muscle
30	chr1:213133000-213146200	Weak transcription	Esophagus	oesophagus
31	chr1:213133200-213153400	Weak transcription	Lung	lung
32	chr1:213133400-213139200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:213133400-213153800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:213133600-213136800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:213133600-213161600	Weak transcription	Fetal Intestine Large	intestine
36	chr1:213133800-213138200	Genic enhancers	GM12878-XiMat	blood
37	chr1:213134200-213136600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:213134600-213152200	Weak transcription	Right Atrium	heart
39	chr1:213134800-213136600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:213134800-213137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:213135000-213144800	Weak transcription	Fetal Intestine Small	intestine
42	chr1:213135400-213137800	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr1:213135600-213137800	Genic enhancers	Brain Germinal Matrix	brain
44	chr1:213135600-213141400	Genic enhancers	Fetal Muscle Leg	muscle
45	chr1:213135800-213138200	Strong transcription	HSMM	muscle

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