Variant report

Variant	rs61839476
Chromosome Location	chr10:38740000-38740001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10827872	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11011566	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11011586	0.81[AFR][1000 genomes]
rs12256706	0.80[AFR][1000 genomes]
rs12776671	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17611390	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17611397	0.82[ASN][1000 genomes]
rs17611446	0.85[AFR][1000 genomes]
rs2754385	0.82[AFR][1000 genomes]
rs2754386	0.83[AFR][1000 genomes]
rs2804650	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2804651	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7080742	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7080985	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs763806	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9731089	0.84[AFR][1000 genomes]
rs9731944	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895034	chr10:38632352-38743545	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv947860	chr10:38678275-38747483	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv895036	chr10:38678941-38741100	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv895037	chr10:38678941-38741777	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv540569	chr10:38689167-38769822	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv16395	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv821215	chr10:38693709-38772324	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv540571	chr10:38696654-38743406	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv540572	chr10:38696654-38769822	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv895040	chr10:38700234-38741100	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv895041	chr10:38700234-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv550420	chr10:38700234-38768341	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv895042	chr10:38700234-38775205	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv895043	chr10:38700234-38790428	Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv948261	chr10:38720728-38744526	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv895044	chr10:38725007-38741100	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv895045	chr10:38725007-38741777	Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
28	esv2762857	chr10:38733507-39076221	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv19338	chr10:38737759-38740414	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
30	esv1007625	chr10:38737794-38740264	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
31	esv1830457	chr10:38738541-38743545	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1833647	chr10:38738541-38743545	ZNF genes & repeats Strong transcription Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv1839987	chr10:38738541-38743545	Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
34	esv1839612	chr10:38738541-38758114	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
35	esv1840702	chr10:38738847-38741100	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38692200-38741000	Weak transcription	Aorta	Aorta
2	chr10:38692800-38741200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:38727800-38740600	Weak transcription	Psoas Muscle	Psoas
4	chr10:38734400-38740000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:38736800-38740600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:38737200-38740400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:38738400-38740000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:38738400-38740000	Weak transcription	Liver	Liver
9	chr10:38738400-38740000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:38738400-38740000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:38738400-38740000	Weak transcription	Right Ventricle	heart
12	chr10:38738400-38741200	Weak transcription	Brain Anterior Caudate	brain
13	chr10:38738400-38742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:38738600-38740600	Weak transcription	Pancreas	Pancrea
15	chr10:38738800-38740400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:38738800-38740400	Weak transcription	Thymus	Thymus
17	chr10:38738800-38741200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:38739400-38740000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:38739400-38740000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:38739400-38740400	Strong transcription	Fetal Muscle Leg	muscle
21	chr10:38739400-38740800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr10:38739600-38740200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr10:38739600-38740200	Strong transcription	Ovary	ovary
24	chr10:38739800-38740000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:38739800-38742400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:38740000-38741000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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