Variant report

Variant	rs61848124
Chromosome Location	chr10:50210710-50210711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11594923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813727	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11813892	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11814277	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11816318	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11817325	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17700388	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2377692	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61848153	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61848377	0.80[AMR][1000 genomes]
rs61850678	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
3	nsv6620	chr10:50197344-50224635	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61848124	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50206200-50211200	Enhancers	Fetal Intestine Small	intestine
2	chr10:50206600-50211000	Enhancers	Fetal Intestine Large	intestine
3	chr10:50208600-50210800	Enhancers	Right Ventricle	heart
4	chr10:50209000-50211000	Enhancers	Ovary	ovary
5	chr10:50209600-50210800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:50209600-50210800	Enhancers	Spleen	Spleen
7	chr10:50209600-50211000	Enhancers	Left Ventricle	heart
8	chr10:50209800-50210800	Enhancers	Fetal Muscle Leg	muscle
9	chr10:50210200-50210800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:50210200-50215200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:50210400-50210800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:50210400-50213000	Weak transcription	Fetal Lung	lung
13	chr10:50210600-50210800	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:50210600-50210800	ZNF genes & repeats	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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