Variant report

Variant	rs2377692
Chromosome Location	chr10:50230347-50230348
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50229481..50231907-chr10:50238016..50240371,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11594923	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11813727	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11813892	0.90[AMR][1000 genomes]
rs11814277	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11817325	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12780892	0.83[EUR][1000 genomes]
rs17011692	0.81[EUR][1000 genomes]
rs17700388	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61848124	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61848153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61848377	0.85[AMR][1000 genomes]
rs61850678	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850681	0.81[EUR][1000 genomes]
rs61850682	0.81[EUR][1000 genomes]
rs61850684	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2377692	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50217400-50231200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:50218600-50238200	Weak transcription	Esophagus	oesophagus
3	chr10:50218800-50231400	Weak transcription	Adipose Nuclei	Adipose
4	chr10:50220400-50233600	Weak transcription	Gastric	stomach
5	chr10:50220800-50231200	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:50221000-50233400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:50221800-50231400	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:50221800-50232400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:50222000-50231400	Weak transcription	Right Ventricle	heart
10	chr10:50222000-50233800	Weak transcription	Lung	lung
11	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:50223000-50231600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:50223000-50231600	Weak transcription	Left Ventricle	heart
14	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
15	chr10:50224200-50231600	Weak transcription	Fetal Kidney	kidney
16	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50224600-50244800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:50225800-50231200	Weak transcription	Brain Substantia Nigra	brain
19	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:50227200-50231400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:50227200-50231600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:50227200-50231600	Weak transcription	Placenta	Placenta
23	chr10:50227400-50231400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:50227800-50231200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:50227800-50231200	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:50227800-50231200	Weak transcription	Fetal Stomach	stomach
27	chr10:50227800-50231400	Weak transcription	Ovary	ovary
28	chr10:50227800-50231600	Weak transcription	Fetal Intestine Small	intestine
29	chr10:50227800-50231600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:50227800-50232400	Weak transcription	Aorta	Aorta
31	chr10:50227800-50237400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:50227800-50238800	Weak transcription	HSMMtube	muscle
33	chr10:50227800-50243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:50228000-50230800	Weak transcription	Fetal Lung	lung
35	chr10:50228000-50231600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:50229000-50231600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:50230000-50231600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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