Variant report

Variant	rs61850682
Chromosome Location	chr10:50252258-50252259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10508911	0.88[EUR][1000 genomes]
rs10857434	0.86[EUR][1000 genomes]
rs11100985	0.87[EUR][1000 genomes]
rs11100994	0.83[EUR][1000 genomes]
rs11814668	0.83[EUR][1000 genomes]
rs11815070	0.83[EUR][1000 genomes]
rs11816318	0.82[EUR][1000 genomes]
rs11817325	0.81[EUR][1000 genomes]
rs12780892	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011692	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17011715	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011726	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011755	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17011799	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17773666	0.90[EUR][1000 genomes]
rs2377692	0.81[EUR][1000 genomes]
rs28505677	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36116147	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4264085	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4272720	0.95[EUR][1000 genomes]
rs4453139	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55648711	0.83[EUR][1000 genomes]
rs55872223	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55936311	0.83[EUR][1000 genomes]
rs56027486	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56157539	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56197478	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59889308	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61166027	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848153	0.81[EUR][1000 genomes]
rs61848370	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848371	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848377	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61848380	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61850678	0.84[EUR][1000 genomes]
rs61850681	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850684	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61850689	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61850690	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61850693	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7084861	0.82[EUR][1000 genomes]
rs72785044	0.90[EUR][1000 genomes]
rs72785050	0.83[EUR][1000 genomes]
rs72785051	0.83[EUR][1000 genomes]
rs72785060	0.85[EUR][1000 genomes]
rs72785072	0.82[EUR][1000 genomes]
rs72785076	0.83[EUR][1000 genomes]
rs72785084	0.82[EUR][1000 genomes]
rs72785087	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61850682	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50223000-50254200	Weak transcription	NHDF-Ad	bronchial
3	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:50232800-50255400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
9	chr10:50234000-50254200	Weak transcription	Left Ventricle	heart
10	chr10:50241600-50263200	Weak transcription	NHLF	lung
11	chr10:50242400-50258000	Weak transcription	Fetal Kidney	kidney
12	chr10:50242400-50259200	Weak transcription	Brain Substantia Nigra	brain
13	chr10:50243400-50261200	Weak transcription	Lung	lung
14	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:50245400-50258200	Weak transcription	Osteobl	bone
16	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:50245800-50257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:50247000-50259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
20	chr10:50247200-50253800	Weak transcription	Adipose Nuclei	Adipose
21	chr10:50247800-50253600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:50247800-50255000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:50248000-50255000	Weak transcription	Right Ventricle	heart
25	chr10:50248200-50253400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:50249200-50258000	Weak transcription	Liver	Liver
27	chr10:50250400-50252400	Strong transcription	Aorta	Aorta
28	chr10:50250400-50255000	Weak transcription	Fetal Stomach	stomach
29	chr10:50250600-50255000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:50251000-50255200	Weak transcription	HSMMtube	muscle
31	chr10:50251200-50253600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr10:50251200-50253600	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:50251200-50253800	Weak transcription	Fetal Lung	lung
34	chr10:50251200-50254200	Weak transcription	Ovary	ovary
35	chr10:50251200-50257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:50251600-50255800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:50252200-50261200	Weak transcription	Psoas Muscle	Psoas

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