Variant report

Variant	rs4264085
Chromosome Location	chr10:50264963-50264964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50242711..50245111-chr10:50261545..50265168,4	MCF-7	breast:
2	chr10:50184382..50184891-chr10:50264179..50264991,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508911	0.87[EUR][1000 genomes]
rs10857434	0.85[EUR][1000 genomes]
rs11100985	0.87[EUR][1000 genomes]
rs11100994	0.83[EUR][1000 genomes]
rs11814668	0.83[EUR][1000 genomes]
rs11815070	0.83[EUR][1000 genomes]
rs12780892	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17011692	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17011715	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17011726	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17011755	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011799	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17773666	0.90[EUR][1000 genomes]
rs28505677	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36116147	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4272720	0.94[EUR][1000 genomes]
rs4453139	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55648711	0.83[EUR][1000 genomes]
rs55872223	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55936311	0.83[EUR][1000 genomes]
rs56027486	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56157539	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56197478	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59889308	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61166027	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61848370	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848371	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848377	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61848380	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61850681	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61850682	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61850684	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61850689	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850690	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850693	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7084861	0.80[EUR][1000 genomes]
rs72785044	0.90[EUR][1000 genomes]
rs72785050	0.83[EUR][1000 genomes]
rs72785051	0.83[EUR][1000 genomes]
rs72785060	0.84[EUR][1000 genomes]
rs72785072	0.82[EUR][1000 genomes]
rs72785076	0.83[EUR][1000 genomes]
rs72785084	0.81[EUR][1000 genomes]
rs72785087	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4264085	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
6	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
7	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:50255800-50270200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:50257200-50266800	Weak transcription	Aorta	Aorta
10	chr10:50258200-50265800	Weak transcription	Fetal Kidney	kidney
11	chr10:50260600-50267800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:50261200-50265000	Enhancers	Right Atrium	heart
13	chr10:50261200-50267400	Enhancers	Right Ventricle	heart
14	chr10:50261200-50267600	Enhancers	Left Ventricle	heart
15	chr10:50261200-50267600	Enhancers	Ovary	ovary
16	chr10:50262000-50267600	Genic enhancers	Fetal Muscle Leg	muscle
17	chr10:50262600-50266400	Weak transcription	HSMMtube	muscle
18	chr10:50262600-50267000	Weak transcription	Lung	lung
19	chr10:50262800-50267400	Enhancers	Adipose Nuclei	Adipose
20	chr10:50262800-50271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:50263000-50267400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:50263400-50267600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:50263400-50272200	Weak transcription	Fetal Brain Male	brain
24	chr10:50263600-50266800	Weak transcription	Psoas Muscle	Psoas
25	chr10:50263800-50265000	Enhancers	Esophagus	oesophagus
26	chr10:50263800-50265200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:50263800-50267000	Weak transcription	Fetal Lung	lung
28	chr10:50264000-50266600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:50264200-50265600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:50264200-50267200	Genic enhancers	Fetal Muscle Trunk	muscle
31	chr10:50264400-50266400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:50264600-50265600	Weak transcription	Placenta	Placenta
33	chr10:50264600-50265600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:50264600-50266000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:50264600-50266000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:50264800-50265600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr10:50264800-50265600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:50264800-50265800	Weak transcription	Spleen	Spleen
39	chr10:50264800-50266000	Strong transcription	Fetal Stomach	stomach
40	chr10:50264800-50266200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:50264800-50266400	Weak transcription	NHLF	lung
42	chr10:50264800-50266600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:50264800-50266600	Weak transcription	Gastric	stomach
44	chr10:50264800-50267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:50264800-50271800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links