Variant report

Variant	rs17011692
Chromosome Location	chr10:50255568-50255569
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10508911	0.95[CEU][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs10857434	0.95[CEU][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs11100985	0.95[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs11100994	0.84[EUR][1000 genomes]
rs11814277	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs11814668	0.84[EUR][1000 genomes]
rs11815070	0.84[EUR][1000 genomes]
rs11816318	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11817325	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12780892	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011715	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011726	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17011755	0.95[CEU][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011799	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17773666	0.95[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs17774058	1.00[CHD][hapmap]
rs2377692	0.81[EUR][1000 genomes]
rs28505677	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36116147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4264085	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4272720	1.00[CEU][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs4453139	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55648711	0.84[EUR][1000 genomes]
rs55872223	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55936311	0.84[EUR][1000 genomes]
rs56027486	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56157539	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56197478	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59889308	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61166027	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848370	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848371	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61848377	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61848380	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61850678	0.83[EUR][1000 genomes]
rs61850681	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61850682	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61850684	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61850689	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61850690	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61850693	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7084861	0.83[EUR][1000 genomes]
rs72785044	0.91[EUR][1000 genomes]
rs72785050	0.84[EUR][1000 genomes]
rs72785051	0.84[EUR][1000 genomes]
rs72785060	0.85[EUR][1000 genomes]
rs72785072	0.83[EUR][1000 genomes]
rs72785076	0.84[EUR][1000 genomes]
rs72785084	0.82[EUR][1000 genomes]
rs72785087	0.82[EUR][1000 genomes]
rs7905715	0.90[CEU][hapmap];1.00[CHD][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17011692	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50224400-50258200	Weak transcription	Brain Anterior Caudate	brain
3	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:50233000-50266000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:50233800-50261400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:50233800-50261400	Weak transcription	Spleen	Spleen
7	chr10:50241600-50263200	Weak transcription	NHLF	lung
8	chr10:50242400-50258000	Weak transcription	Fetal Kidney	kidney
9	chr10:50242400-50259200	Weak transcription	Brain Substantia Nigra	brain
10	chr10:50243400-50261200	Weak transcription	Lung	lung
11	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:50245400-50258200	Weak transcription	Osteobl	bone
13	chr10:50245600-50264200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:50245800-50257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:50247000-50259000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:50247800-50271600	Weak transcription	Fetal Intestine Small	intestine
18	chr10:50249200-50258000	Weak transcription	Liver	Liver
19	chr10:50251200-50257800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:50251600-50255800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:50252200-50261200	Weak transcription	Psoas Muscle	Psoas
22	chr10:50252400-50257000	Weak transcription	Aorta	Aorta
23	chr10:50253400-50257000	Strong transcription	Stomach Smooth Muscle	stomach
24	chr10:50253600-50255800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:50253600-50256400	Strong transcription	Fetal Muscle Leg	muscle
26	chr10:50253600-50257000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:50253800-50255600	Strong transcription	Adipose Nuclei	Adipose
28	chr10:50253800-50256800	Strong transcription	Fetal Lung	lung
29	chr10:50254200-50255800	Strong transcription	NHDF-Ad	bronchial
30	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:50255000-50255600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:50255000-50255600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr10:50255000-50255800	Genic enhancers	Ovary	ovary
34	chr10:50255000-50255800	Strong transcription	Right Ventricle	heart
35	chr10:50255000-50256600	Strong transcription	Fetal Stomach	stomach
36	chr10:50255200-50257200	Strong transcription	HSMMtube	muscle
37	chr10:50255400-50255800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr10:50255400-50256800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:50255400-50257000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:50255400-50261200	Weak transcription	Left Ventricle	heart

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